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BaseInfo

ncRNA ID	novel_csa_miR121
Species	Camelina sativa
Class	miRNA
Genome position	Chr6:6064330-6064433 [-]
Reference genome	Cs
Source	SRR1736515
Length	22
Mature sequence(if miRNA)	83 - CAUGACUUGUUGAACAAUGGCA - 104
Stem-loop(if miRNA)	--C UG    G U      U  CAUUU     ---CUCU    U    AGU  AA    A  ACUU U GAACAA GG     CUUCU       GCAU UGAU   GA  U    |  |||| | |||||| ||     |||||       |||| ||||   ||  C    U  UGAA G CUUGUU CC     GAAGA       CGUA ACUA   CU  U GUU GU    G U      -  -UUUC     CCCUGUU    C    --G  GU
Stem-loop sequence	CAUGACUUGUUGAACAAUGGCAUUUCUUCUCUCUGCAUUUGAUAGUGAAAUCUUGUCGAUCACAUGCUUGUCCCAGAAGCUUUCCUUGUUCUGGAAGUUGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GABO01053479.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||||||||||||| targets:658   UCACAUGGUUCAACAAGUCAUG   679 Target Full Sequence	1.0	TSA: Camelina sativa Unigene82826_WT mRNA sequence	NA	coding protein	psRNATarget
GAFB01031463.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||||||||||||| targets:667   UCACAUGGUUCAACAAGUCAUG   688 Target Full Sequence	1.0	TSA: Camelina sativa Locus_10676_Transcript_2/5_Confidence_0.636_Length_1652 mRNA sequence	NA	coding protein	psRNATarget
GAFB01031462.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||||||||||||| targets:667   UCACAUGGUUCAACAAGUCAUG   688 Target Full Sequence	1.0	TSA: Camelina sativa Locus_10676_Transcript_1/5_Confidence_0.636_Length_1734 mRNA sequence	NA	coding protein	psRNATarget
GAFB01031466.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||||||||||||| targets:667   UCACAUGGUUCAACAAGUCAUG   688 Target Full Sequence	1.0	TSA: Camelina sativa Locus_10676_Transcript_5/5_Confidence_0.636_Length_1734 mRNA sequence	NA	coding protein	psRNATarget
GAFB01031464.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||||||||||||| targets:667   UCACAUGGUUCAACAAGUCAUG   688 Target Full Sequence	1.0	TSA: Camelina sativa Locus_10676_Transcript_3/5_Confidence_0.636_Length_1734 mRNA sequence	NA	coding protein	psRNATarget
GAFB01031465.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||||||||||||| targets:667   UCACAUGGUUCAACAAGUCAUG   688 Target Full Sequence	1.0	TSA: Camelina sativa Locus_10676_Transcript_4/5_Confidence_0.545_Length_1741 mRNA sequence	NA	coding protein	psRNATarget
XM_010505197.2	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||||||||||||| targets:771   UCACAUGGUUCAACAAGUCAUG   792 Target Full Sequence	1.0	PREDICTED: Camelina sativa non-specific phospholipase C6 (LOC104780675), mRNA	NA	coding protein	psRNATarget
XM_010447312.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |||||||||||*|||||||||| targets:292   UGCCAUUGUUCUACAAGUCAUG   313 Target Full Sequence	1.5	PREDICTED: Camelina sativa uncharacterized LOC104728315 (LOC104728315), mRNA	NA	coding protein	psRNATarget
XM_010425900.1	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |||||||||||*|||||||||| targets:289   UGCCAUUGUUCUACAAGUCAUG   310 Target Full Sequence	1.5	PREDICTED: Camelina sativa uncharacterized LOC104709255 (LOC104709255), mRNA	NA	coding protein	psRNATarget
XM_010428056.2	ncRNA:22   ACGGUAACAAGUUGUUCAGUAC   1   |**|||*||||=|||||||||| targets:844   UCACAUGGUUCGACAAGUCAUG   865 Target Full Sequence	2.5	PREDICTED: Camelina sativa non-specific phospholipase C6-like (LOC104711356), mRNA	NA	coding protein	psRNATarget