Search result

BaseInfo

ncRNA ID novel_csa_miR119
Species Camelina sativa
Class miRNA
Genome position Chr6:25477244-25477457 [+]
Reference genome Cs
Source SRR1736515
Length 21
Mature sequence(if miRNA) 194 - UUUGGAUUGAAGGGAGCUCCU - 214
Stem-loop(if miRNA) --            -      A         CA   UUUA     C  ---------      -   ---       U       G U     --    AG   AAAUUGA     AA
  GAGCUCCCUUCG UCCAAA CGAAGAGGA  AGA    AGGAA UA         AAAAGC AGA   AUCUAAG GUUCAUG A UCCUC  AAAG  UGC       AGGUU  C
  |||||||||||| |||||| |||||||||  |||    ||||| ||         |||||| |||   ||||||| ||||||| | |||||  ||||  |||       |||||
  CUCGAGGGAAGU AGGUUU GCUUCUCUU  UCU    UCCUU AU         UUUUUG UCU   UAGAUUC CGAGUAC U AGGAG  UUUC  GCG       UCCGA  A
UC            U      -         -C   ----     U  AUACAUCUC      C   CUU       U       G U     AA    CU   AAAGAAG     CA
Stem-loop sequence GAGCUCCCUUCGUCCAAAACGAAGAGGACAAGAUUUAAGGAACUAAAAAGCAGAAUCUAAGUGUUCAUGGAUUCCUCAAAGAGUGCAAAUUGAAGGUUAACAACAGCCUGAAGAAAGCGUCCUUUAAGAGGAUUGCAUGAGCUCUUAGAUUUCUCUCGUUUUUCUCUACAUAUAUUUCCUUCUCUUCUCUUCGUUUGGAUUGAAGGGAGCUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAFB01044580.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  =|||||||||||||=|||||=
targets:319   GGGAGCUCCCUUCAGUCCAAG   339

2.5 TSA: Camelina sativa Locus_18636_Transcript_1/1_Confidence_1.000_Length_807 mRNA sequence NA coding protein psRNATarget
XM_019240093.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  ||*||||||||||||*|||||
targets:1305   AGCAGCUCCCUUCAAACCAAA   1325

2.5 PREDICTED: Camelina sativa transcription factor MYB26-like (LOC104761524), mRNA NA coding protein psRNATarget
XM_019233024.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  ||*||||||||||||*|||||
targets:2025   AGCAGCUCCCUUCAAACCAAA   2045

2.5 PREDICTED: Camelina sativa myb-like protein A (LOC104726037), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019233025.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  ||*||||||||||||*|||||
targets:2025   AGCAGCUCCCUUCAAACCAAA   2045

2.5 PREDICTED: Camelina sativa myb-like protein A (LOC104726037), transcript variant X3, mRNA NA coding protein psRNATarget
XM_019233023.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  ||*||||||||||||*|||||
targets:2025   AGCAGCUCCCUUCAAACCAAA   2045

2.5 PREDICTED: Camelina sativa myb-like protein A (LOC104726037), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019236440.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  ||*||||||||||||*|||||
targets:2046   AGCAGCUCCCUUCAAACCAAA   2066

2.5 PREDICTED: Camelina sativa transcription factor MYB26-like (LOC104731312), mRNA NA coding protein psRNATarget
XM_019246385.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  ||||*|||||||||*||||||
targets:2709   AGGAUCUCCCUUCAUUCCAAA   2729

2.5 PREDICTED: Camelina sativa uncharacterized LOC109133354 (LOC109133354), mRNA NA coding protein psRNATarget
XM_010466545.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  *|||||||||||||*|||||*
targets:1189   UGGAGCUCCCUUCAUUCCAAU   1209

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104745344), mRNA NA coding protein psRNATarget
XM_010497488.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  *|||||||||||||*|||||*
targets:1211   UGGAGCUCCCUUCAUUCCAAU   1231

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104772907), mRNA NA coding protein psRNATarget
XM_010492854.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  *|||||||||||||*|||||*
targets:1150   UGGAGCUCCCUUCAUUCCAAU   1170

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104768802), mRNA NA coding protein psRNATarget
XM_010425084.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  *|||||||||||||*|||||*
targets:1239   UGGAGCUCCCUUCAUUCCAAU   1259

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010454221.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  *|||||||||||||*|||||*
targets:1221   UGGAGCUCCCUUCAUUCCAAU   1241

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010425085.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  *|||||||||||||*|||||*
targets:1283   UGGAGCUCCCUUCAUUCCAAU   1303

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010454222.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  *|||||||||||||*|||||*
targets:1288   UGGAGCUCCCUUCAUUCCAAU   1308

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019245807.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  **|||||=|||||||*|||||
targets:714   UAGAGCUUCCUUCAAACCAAA   734

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104786339), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010415689.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  **|||||=|||||||*|||||
targets:672   UAGAGCUUCCUUCAAACCAAA   692

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104700212), mRNA NA coding protein psRNATarget
XM_010511711.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  **|||||=|||||||*|||||
targets:1144   UAGAGCUUCCUUCAAACCAAA   1164

2.5 PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104786339), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019245513.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  |*||||||||||||*|||||*
targets:860   ACGAGCUCCCUUCAUUCCAAU   880

2.5 PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104787043), mRNA NA coding protein psRNATarget
XM_010474781.2
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  |*||||||||||||*|||||*
targets:857   ACGAGCUCCCUUCAUUCCAAU   877

2.5 PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104752592), mRNA NA coding protein psRNATarget
XM_019228039.1
ncRNA:21   UCCUCGAGGGAAGUUAGGUUU   1
  |*||||||||||||*|||||*
targets:936   ACGAGCUCCCUUCAUUCCAAU   956

2.5 PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104703509), mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.