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BaseInfo

ncRNA ID	novel_csa_miR116
Species	Camelina sativa
Class	miRNA
Genome position	Chr5:257643-257719 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	57 - UGGAGAAGCAGGGCACGUGCA - 77
Stem-loop(if miRNA)	--        CA   C         C  ACAA     A   UGGAGAAG  GGG ACGUGCAAA CA    AGACG A   ||||||||  ||| ||||||||| ||    ||||| A   ACCUCUUC  CUC UGCACGUUU GU    UCUGC U CA        CC   A         C  GUAC     C
Stem-loop sequence	UGGAGAAGCAGGGCACGUGCAAACCAACAAAGACGAAAUCCGUCUCAUGUGCUUUGCACGUACUCCCCUUCUCCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GAFB01045415.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:663   UUUACGUGCCCUGCUUCUCCA   683 Target Full Sequence	1.0	TSA: Camelina sativa Locus_19360_Transcript_1/1_Confidence_1.000_Length_989 mRNA sequence	NA	coding protein	psRNATarget
XM_010493085.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:859   UUUACGUGCCCUGCUUCUCCA   879 Target Full Sequence	1.0	PREDICTED: Camelina sativa NAC domain-containing protein 79-like (LOC104768977), mRNA	NA	coding protein	psRNATarget
XM_010454433.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:882   UUUACGUGCCCUGCUUCUCCA   902 Target Full Sequence	1.0	PREDICTED: Camelina sativa NAC domain-containing protein 79-like (LOC104734791), mRNA	NA	coding protein	psRNATarget
XM_010424877.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:898   UUUACGUGCCCUGCUUCUCCA   918 Target Full Sequence	1.0	PREDICTED: Camelina sativa NAC domain-containing protein 79 (LOC104708327), mRNA	NA	coding protein	psRNATarget
GAFB01027252.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||||||*||||||||||||| targets:777   AGCACGUACCCUGCUUCUCCA   797 Target Full Sequence	1.0	TSA: Camelina sativa Locus_8484_Transcript_2/2_Confidence_0.750_Length_1210 mRNA sequence	NA	coding protein	psRNATarget
GAFB01027251.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||||||*||||||||||||| targets:777   AGCACGUACCCUGCUUCUCCA   797 Target Full Sequence	1.0	TSA: Camelina sativa Locus_8484_Transcript_1/2_Confidence_0.750_Length_1213 mRNA sequence	NA	coding protein	psRNATarget
XM_010464167.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||||||*||||||||||||| targets:816   AGCACGUACCCUGCUUCUCCA   836 Target Full Sequence	1.0	PREDICTED: Camelina sativa NAC domain-containing protein 21/22 (LOC104743042), mRNA	NA	coding protein	psRNATarget
XM_010481859.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||||||*||||||||||||| targets:862   AGCACGUACCCUGCUUCUCCA   882 Target Full Sequence	1.0	PREDICTED: Camelina sativa NAC domain-containing protein 21/22-like (LOC104758892), mRNA	NA	coding protein	psRNATarget
XM_010502930.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||||||*||||||||||||| targets:956   AGCACGUACCCUGCUUCUCCA   976 Target Full Sequence	1.0	PREDICTED: Camelina sativa NAC domain-containing protein 21/22 (LOC104778471), mRNA	NA	coding protein	psRNATarget
XM_010488733.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*|||*||||||||||||| targets:701   AGCCCGUACCCUGCUUCUCCA   721 Target Full Sequence	2.0	PREDICTED: Camelina sativa NAC domain-containing protein 21/22-like (LOC104765069), mRNA	NA	coding protein	psRNATarget
XM_010501424.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*|||*||||||||||||| targets:678   AGCCCGUACCCUGCUUCUCCA   698 Target Full Sequence	2.0	PREDICTED: Camelina sativa NAC domain-containing protein 21/22-like (LOC104777208), mRNA	NA	coding protein	psRNATarget
GABO01002123.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:4   CUCACGUGACCUGCUUCUCCG   24 Target Full Sequence	2.5	TSA: Camelina sativa Unigene2152_WT mRNA sequence	NA	coding protein	psRNATarget
XM_010453515.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:512   CUCACGUGACCUGCUUCUCCG   532 Target Full Sequence	2.5	PREDICTED: Camelina sativa NAC domain-containing protein 92-like (LOC104733999), partial mRNA	NA	coding protein	psRNATarget
GAFB01042454.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:648   CUCACGUGACCUGCUUCUCCG   668 Target Full Sequence	2.5	TSA: Camelina sativa Locus_16946_Transcript_1/1_Confidence_1.000_Length_966 mRNA sequence	NA	coding protein	psRNATarget
XM_010442774.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:944   CUCACGUGACCUGCUUCUCCG   964 Target Full Sequence	2.5	PREDICTED: Camelina sativa NAC domain-containing protein 92 (LOC104724312), mRNA	NA	coding protein	psRNATarget
XM_010437571.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:930   CUCACGUGACCUGCUUCUCCG   950 Target Full Sequence	2.5	PREDICTED: Camelina sativa NAC domain-containing protein 92 (LOC104719618), mRNA	NA	coding protein	psRNATarget