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BaseInfo

ncRNA ID	novel_csa_miR115
Species	Camelina sativa
Class	miRNA
Genome position	Chr5:3711390-3711566 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - UUUGGACUGAAGGGAGCUCCU - 21
Stem-loop(if miRNA)	--   A              U        GAAAAAG       -UA         G   AC    C  UC  AA    C     AGAC     A   GAG UUCUUUCAGUCCAG CAUGGAUA       AAGAGGG   GAAAUAUCU CCG  UCAU CA  CA  CACU GUGGU    AAAAU U   ||| |||||||||||||| ||||||||       |||||||   ||||||||| |||  |||| ||  ||  |||| |||||    |||||   CUC AGGGAAGUCAGGUU GUGUCUAU       UUCUUCC   UUUUAUAGA GGC  AGUA GU  GU  GUGA CGCCA    UUUUA A UC   G              U        -------       UAG         G   GU    A  GU  CA    -     --AA     G
Stem-loop sequence	GAGAUUCUUUCAGUCCAGUCAUGGAUAGAAAAAGAAGAGGGUAGAAAUAUCUGCCGACUCAUCCAUCCAAACACUCGUGGUAGACAAAAUAUAGAUUUUAAACCGCAGUGACUGUGUGAAUGAUGCGGGAGAUAUUUUGAUCCUUCUUUAUCUGUGUUUGGACUGAAGGGAGCUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GAFB01044580.1	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   =|||||||||||||||||||= targets:319   GGGAGCUCCCUUCAGUCCAAG   339 Target Full Sequence	1.0	TSA: Camelina sativa Locus_18636_Transcript_1/1_Confidence_1.000_Length_807 mRNA sequence	NA	coding protein	psRNATarget
XM_019246385.1	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   ||||*|||||||||*|||||| targets:2709   AGGAUCUCCCUUCAUUCCAAA   2729 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC109133354 (LOC109133354), mRNA	NA	coding protein	psRNATarget
XM_010466545.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   *|||||||||||||*|||||* targets:1189   UGGAGCUCCCUUCAUUCCAAU   1209 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104745344), mRNA	NA	coding protein	psRNATarget
XM_010497488.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   *|||||||||||||*|||||* targets:1211   UGGAGCUCCCUUCAUUCCAAU   1231 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104772907), mRNA	NA	coding protein	psRNATarget
XM_010492854.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   *|||||||||||||*|||||* targets:1150   UGGAGCUCCCUUCAUUCCAAU   1170 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104768802), mRNA	NA	coding protein	psRNATarget
XM_010425084.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   *|||||||||||||*|||||* targets:1239   UGGAGCUCCCUUCAUUCCAAU   1259 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010454221.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   *|||||||||||||*|||||* targets:1221   UGGAGCUCCCUUCAUUCCAAU   1241 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010425085.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   *|||||||||||||*|||||* targets:1283   UGGAGCUCCCUUCAUUCCAAU   1303 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010454222.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   *|||||||||||||*|||||* targets:1288   UGGAGCUCCCUUCAUUCCAAU   1308 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019245513.1	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   |*||||||||||||*|||||* targets:860   ACGAGCUCCCUUCAUUCCAAU   880 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104787043), mRNA	NA	coding protein	psRNATarget
XM_010474781.2	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   |*||||||||||||*|||||* targets:857   ACGAGCUCCCUUCAUUCCAAU   877 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104752592), mRNA	NA	coding protein	psRNATarget
XM_019228039.1	ncRNA:21   UCCUCGAGGGAAGUCAGGUUU   1   |*||||||||||||*|||||* targets:936   ACGAGCUCCCUUCAUUCCAAU   956 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104703509), mRNA	NA	coding protein	psRNATarget