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BaseInfo

ncRNA ID novel_csa_miR114
Species Camelina sativa
Class miRNA
Genome position Chr5:5363655-5363733 [-]
Reference genome Cs
Source SRR1736515
Length 21
Mature sequence(if miRNA) 59 - AAGCUCAGGAGGGAUAGCGCC - 79
Stem-loop(if miRNA) --          G           -UG      AU   UC
  AAGCUCAGGA GGAUAGCGCCA   AUGAUC  UAU  A
  |||||||||| |||||||||||   ||||||  |||
  UUUGAGUCCU CCUAUCGCGGU   UAUUAG  AUA  C
AC          A           UUA      AU   UA
Stem-loop sequence AAGCUCAGGAGGGAUAGCGCCAUGAUGAUCAUUAUUCACAUAUAUAGAUUAUAUUUGGCGCUAUCCAUCCUGAGUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010517462.2
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  *||||*|||||*|||||||||
targets:2949   UGCGCAAUCCCGCCUGAGCUU   2969

2.5 PREDICTED: Camelina sativa serine/threonine-protein kinase KIPK1 (LOC104791546), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010517463.2
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  *||||*|||||*|||||||||
targets:2957   UGCGCAAUCCCGCCUGAGCUU   2977

2.5 PREDICTED: Camelina sativa serine/threonine-protein kinase KIPK1 (LOC104791546), transcript variant X2, mRNA NA coding protein psRNATarget