ncRNA ID | novel_csa_miR114 |
Species | Camelina sativa |
Class | miRNA |
Genome position | Chr5:5363655-5363733 [-] |
Reference genome | Cs |
Source | SRR1736515 |
Length | 21 |
Mature sequence(if miRNA) | 59 - AAGCUCAGGAGGGAUAGCGCC - 79 |
Stem-loop(if miRNA) |
--          G           -UG      AU   UC   AAGCUCAGGA GGAUAGCGCCA   AUGAUC  UAU  A   |||||||||| |||||||||||   ||||||  |||   UUUGAGUCCU CCUAUCGCGGU   UAUUAG  AUA  C AC          A           UUA      AU   UA |
Stem-loop sequence | AAGCUCAGGAGGGAUAGCGCCAUGAUGAUCAUUAUUCACAUAUAUAGAUUAUAUUUGGCGCUAUCCAUCCUGAGUUUCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010517462.2 |
|
2.5 | PREDICTED: Camelina sativa serine/threonine-protein kinase KIPK1 (LOC104791546), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_010517463.2 |
|
2.5 | PREDICTED: Camelina sativa serine/threonine-protein kinase KIPK1 (LOC104791546), transcript variant X2, mRNA | NA | coding protein | psRNATarget |