Search result

BaseInfo

ncRNA ID	novel_csa_miR111
Species	Camelina sativa
Class	miRNA
Genome position	Chr5:32631651-32631723 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - UUAGAUGACCAUCAACAAACG - 21
Stem-loop(if miRNA)	--           A      U  AU        UCC   UUUGUUGAUGG CAUCUA GC  AUCGGUCA   U   ||||||||||| |||||| ||  ||||||||   C   AAACAACUACC GUAGAU UG  UAGCUAGU   G GC           A      U  CU        UGU
Stem-loop sequence	UUUGUUGAUGGACAUCUAUGCAUAUCGGUCAUCCUCGUGUUGAUCGAUUCGUUUAGAUGACCAUCAACAAACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010458977.1	ncRNA:21   GCAAACAACUACCAGUAGAUU   1   **||||||||||||||||||| targets:46   AUUUUGUUGAUGGUCAUCUAA   66 Target Full Sequence	0.0	PREDICTED: Camelina sativa E3 ubiquitin-protein ligase BAH1 (LOC104738773), mRNA	NA	coding protein	psRNATarget
XM_010476567.2	ncRNA:21   GCAAACAACUACCAGUAGAUU   1   =*||||||||||||||||||| targets:189   UUUUUGUUGAUGGUCAUCUAA   209 Target Full Sequence	0.0	PREDICTED: Camelina sativa E3 ubiquitin-protein ligase BAH1-like (LOC104754386), mRNA	NA	coding protein	psRNATarget
XM_010510744.1	ncRNA:21   GCAAACAACUACCAGUAGAUU   1   *||||*|||||||*||||||| targets:1575   GGUUUCUUGAUGGACAUCUAA   1595 Target Full Sequence	2.5	PREDICTED: Camelina sativa DNA polymerase I B, chloroplastic/mitochondrial-like (LOC109124566), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010510754.2	ncRNA:21   GCAAACAACUACCAGUAGAUU   1   *||||*|||||||*||||||| targets:1576   GGUUUCUUGAUGGACAUCUAA   1596 Target Full Sequence	2.5	PREDICTED: Camelina sativa DNA polymerase I B, chloroplastic/mitochondrial-like (LOC109124566), transcript variant X2, mRNA	NA	coding protein	psRNATarget