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BaseInfo

ncRNA ID	novel_csa_miR99
Species	Camelina sativa
Class	miRNA
Genome position	Chr4:24527346-24527423 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - AUUCACCACCUUCAUCAUCUU - 21
Stem-loop(if miRNA)	--    C     A        C A          G AAA   GAUG UGAAG UGGUGAAU G AGAAGAUGAU A   A   |||| ||||| |||||||| | |||||||||| |   CUAC ACUUC ACCACUUA C UCUUUUAUUA U   U UU    U     C        A C          G CUA
Stem-loop sequence	GAUGCUGAAGAUGGUGAAUCGAAGAAGAUGAUGAAAAAUAUCUGAUUAUUUUCUCCAAUUCACCACCUUCAUCAUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019239684.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   *=||||=*||||||||||||| targets:1308   UGGAUGGAGAAGGUGGUGAAU   1328 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized protein At1g10890-like (LOC104755318), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019239685.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   *=||||=*||||||||||||| targets:1863   UGGAUGGAGAAGGUGGUGAAU   1883 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized protein At1g10890-like (LOC104755318), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GAFB01026625.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   *|||||||||||||||||=|* targets:623   CAGAUGAUGAAGGUGGUGGAG   643 Target Full Sequence	2.5	TSA: Camelina sativa Locus_8199_Transcript_2/2_Confidence_0.500_Length_940 mRNA sequence	NA	coding protein	psRNATarget
GAFB01026624.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   *|||||||||||||||||=|* targets:623   CAGAUGAUGAAGGUGGUGGAG   643 Target Full Sequence	2.5	TSA: Camelina sativa Locus_8199_Transcript_1/2_Confidence_0.750_Length_955 mRNA sequence	NA	coding protein	psRNATarget
XM_010497755.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   *=||||||||||||||||=|* targets:137   CGGAUGAUGAAGGUGGUGGAG   157 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC104773177 (LOC104773177), mRNA	NA	coding protein	psRNATarget
XM_019239004.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   *=||||||||||||||||=|* targets:491   CGGAUGAUGAAGGUGGUGGAG   511 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC109129953 (LOC109129953), mRNA	NA	coding protein	psRNATarget
XM_010438224.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   **|||||||||||||||||=* targets:191   CUGAUGAUGAAGGUGGUGAGG   211 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC104720296 (LOC104720296), mRNA	NA	coding protein	psRNATarget
XM_010507119.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   ||||||*|||||*|||||||| targets:194   AAGAUGCUGAAGAUGGUGAAU   214 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein NRT1/ PTR FAMILY 5.5-like (LOC104782243), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010508291.2	ncRNA:21   UUCUACUACUUCCACCACUUA   1   |*|||||||||||||||||** targets:737   AUGAUGAUGAAGGUGGUGAUA   757 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC104783174 (LOC104783174), mRNA	NA	coding protein	psRNATarget
XM_010519954.2	ncRNA:21   UUCUACUACUUCCACCACUUA   1   |*|||||||||||||||||** targets:747   AUGAUGAUGAAGGUGGUGAUA   767 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC104793569 (LOC104793569), mRNA	NA	coding protein	psRNATarget
GAFB01028249.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   =||*|||||||*||||||||| targets:157   GAGUUGAUGAAAGUGGUGAAU   177 Target Full Sequence	2.5	TSA: Camelina sativa Locus_8980_Transcript_1/1_Confidence_1.000_Length_1068 mRNA sequence	NA	coding protein	psRNATarget
XM_010454337.2	ncRNA:21   UUCUACUACUUCCACCACUUA   1   =||*|||||||*||||||||| targets:1850   GAGUUGAUGAAAGUGGUGAAU   1870 Target Full Sequence	2.5	PREDICTED: Camelina sativa probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 (LOC104734706), mRNA	NA	coding protein	psRNATarget
XM_010424982.1	ncRNA:21   UUCUACUACUUCCACCACUUA   1   =||*|||||||*||||||||| targets:1860   GAGUUGAUGAAAGUGGUGAAU   1880 Target Full Sequence	2.5	PREDICTED: Camelina sativa probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 (LOC104708411), mRNA	NA	coding protein	psRNATarget
XM_010492985.2	ncRNA:21   UUCUACUACUUCCACCACUUA   1   =||*|||||||*||||||||| targets:1878   GAGCUGAUGAAAGUGGUGAAU   1898 Target Full Sequence	2.5	PREDICTED: Camelina sativa probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 (LOC104768897), mRNA	NA	coding protein	psRNATarget
XM_010467944.2	ncRNA:21   UUCUACUACUUCCACCACUUA   1   |||=|||*||||||||||||* targets:227   AAGGUGAGGAAGGUGGUGAAC   247 Target Full Sequence	3.0	PREDICTED: Camelina sativa probable tetraacyldisaccharide 4'-kinase, mitochondrial (LOC104746460), mRNA	NA	coding protein	psRNATarget
XM_010467937.2	ncRNA:21   UUCUACUACUUCCACCACUUA   1   |||=|||*||||||||||||* targets:227   AAGGUGAGGAAGGUGGUGAAC   247 Target Full Sequence	3.0	PREDICTED: Camelina sativa probable tetraacyldisaccharide 4'-kinase, mitochondrial (LOC104746454), mRNA	NA	coding protein	psRNATarget