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BaseInfo

ncRNA ID	novel_csa_miR90
Species	Camelina sativa
Class	miRNA
Genome position	Chr3:11375619-11375724 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - CUGAAGUGUUUGGGGGGACUC - 21
Stem-loop(if miRNA)	--       UU         U        -    --   AAA    C    GUUU   GUUCCCU  AACGCUUCA UGUUGUUA AUAC  ACC   AACA AUAU    U   |||||||  ||||||||| |||||||| ||||  |||   |||| ||||    C   CAGGGGG  UUGUGAAGU ACAACAAU UAUG  UGG   UUGU UGUA    U CU       GU         C        A    UU   --C    C    AAAU
Stem-loop sequence	GUUCCCUUUAACGCUUCAUUGUUGUUAAUACACCAAAAACACAUAUGUUUUCUUAAAAUGUCUGUUCGGUUUGUAUAUAACAACACUGAAGUGUUUGGGGGGACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GAFB01016068.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:50   GAGUGCCUCCAAACACUUCAG   70 Target Full Sequence	2.0	TSA: Camelina sativa Locus_4227_Transcript_1/1_Confidence_1.000_Length_550 mRNA sequence	NA	coding protein	psRNATarget
XM_010420510.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1163   GAGUGCCUCCAAACACUUCAG   1183 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104704415 (LOC104704415), partial mRNA	NA	coding protein	psRNATarget
XM_010416183.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:984   GAGUGCCUCCAAACACUUCAG   1004 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104700645 (LOC104700645), mRNA	NA	coding protein	psRNATarget
XM_019237492.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1153   GAGUGCCUCCAAACACUUCAG   1173 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104750019 (LOC104750019), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010471748.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1154   GAGUGCCUCCAAACACUUCAG   1174 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104750019 (LOC104750019), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019237491.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1154   GAGUGCCUCCAAACACUUCAG   1174 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104750019 (LOC104750019), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010512279.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1159   GAGUGCCUCCAAACACUUCAG   1179 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104786823 (LOC104786823), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010512281.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1160   GAGUGCCUCCAAACACUUCAG   1180 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104786823 (LOC104786823), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GABO01043352.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:31   GAGUUCCUCCAAACACUUCAU   51 Target Full Sequence	3.0	TSA: Camelina sativa Unigene72679_WT mRNA sequence	NA	coding protein	psRNATarget
XM_010496053.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:420   GAGUUCCUCCAAACACUUCAU   440 Target Full Sequence	3.0	PREDICTED: Camelina sativa ATP sulfurylase 4, chloroplastic-like (LOC104771523), transcript variant X4, mRNA	NA	coding protein	psRNATarget
GAFB01005791.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:216   GAGUUCCUCCAAACACUUCAU   236 Target Full Sequence	3.0	TSA: Camelina sativa Locus_1340_Transcript_1/3_Confidence_0.667_Length_1499 mRNA sequence	NA	coding protein	psRNATarget
GAFB01005793.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:216   GAGUUCCUCCAAACACUUCAU   236 Target Full Sequence	3.0	TSA: Camelina sativa Locus_1340_Transcript_3/3_Confidence_0.667_Length_1580 mRNA sequence	NA	coding protein	psRNATarget
GAFB01005792.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:216   GAGUUCCUCCAAACACUUCAU   236 Target Full Sequence	3.0	TSA: Camelina sativa Locus_1340_Transcript_2/3_Confidence_0.667_Length_1580 mRNA sequence	NA	coding protein	psRNATarget
XM_010443688.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:415   GAGUUCCUCCAAACACUUCAU   435 Target Full Sequence	3.0	PREDICTED: Camelina sativa ATP sulfurylase 4, chloroplastic (LOC104725082), mRNA	NA	coding protein	psRNATarget
XM_010483526.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:424   GAGUUCCUCCAAACACUUCAU   444 Target Full Sequence	3.0	PREDICTED: Camelina sativa ATP sulfurylase 4, chloroplastic (LOC104760581), mRNA	NA	coding protein	psRNATarget
XM_019242059.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:420   GAGUUCCUCCAAACACUUCAU   440 Target Full Sequence	3.0	PREDICTED: Camelina sativa ATP sulfurylase 4, chloroplastic-like (LOC104771523), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019242058.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:420   GAGUUCCUCCAAACACUUCAU   440 Target Full Sequence	3.0	PREDICTED: Camelina sativa ATP sulfurylase 4, chloroplastic-like (LOC104771523), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010496054.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:421   GAGUUCCUCCAAACACUUCAU   441 Target Full Sequence	3.0	PREDICTED: Camelina sativa ATP sulfurylase 4, chloroplastic-like (LOC104771523), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_019242060.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:422   GAGUUCCUCCAAACACUUCAU   442 Target Full Sequence	3.0	PREDICTED: Camelina sativa ATP sulfurylase 4, chloroplastic-like (LOC104771523), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010493371.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:190   AAGUUCUCCCAAACACUUCAA   210 Target Full Sequence	3.0	PREDICTED: Camelina sativa sulfate transporter 2.1 (LOC104769217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010493372.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:148   AAGUUCUCCCAAACACUUCAA   168 Target Full Sequence	3.0	PREDICTED: Camelina sativa sulfate transporter 2.1 (LOC104769217), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010493372.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:190   AAGUUCUCCCAAACACUUCAA   210 Target Full Sequence	3.0	PREDICTED: Camelina sativa sulfate transporter 2.1 (LOC104769217), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010454740.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:135   AAGUUCUCCCAAACACUUCAA   155 Target Full Sequence	3.0	PREDICTED: Camelina sativa sulfate transporter 2.1 (LOC104735026), mRNA	NA	coding protein	psRNATarget
XM_010454740.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:177   AAGUUCUCCCAAACACUUCAA   197 Target Full Sequence	3.0	PREDICTED: Camelina sativa sulfate transporter 2.1 (LOC104735026), mRNA	NA	coding protein	psRNATarget
XM_010493370.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:189   AAGUUCUCCCAAACACUUCAA   209 Target Full Sequence	3.0	PREDICTED: Camelina sativa sulfate transporter 2.1 (LOC104769217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010493370.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:231   AAGUUCUCCCAAACACUUCAA   251 Target Full Sequence	3.0	PREDICTED: Camelina sativa sulfate transporter 2.1 (LOC104769217), transcript variant X1, mRNA	NA	coding protein	psRNATarget