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BaseInfo

ncRNA ID novel_csa_miR72
Species Camelina sativa
Class miRNA
Genome position Chr20:3725537-3725619 [+]
Reference genome Cs
Source SRR1736515
Length 22
Mature sequence(if miRNA) 62 - CUCGGACCAGGCUUCAUUCCCC - 83
Stem-loop(if miRNA) --      UU      CU     -    CA    ------    A
  GGAAUG  GUCUGG  CGAGG UCAU  AGAA      GAUC U
  ||||||  ||||||  ||||| ||||  ||||      ||||
  CCUUAC  CGGACC  GCUCU AGUA  UUUU      UUAG U
CC      UU      AG     U    AA    ACUUGA    A
Stem-loop sequence GGAAUGUUGUCUGGCUCGAGGUCAUCAAGAAGAUCAUUAGAUUAGUUCAUUUUAAAUGAUUCUCGGACCAGGCUUCAUUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010508707.1
ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1
  *||||||*|||||||||=||||
targets:600   UGGGAAUAAAGCCUGGUUCGAG   621

2.5 PREDICTED: Camelina sativa uncharacterized LOC104783562 (LOC104783562), mRNA NA coding protein psRNATarget
XM_010463750.2
ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1
  **||||||||||||||||||=*
targets:338   CUGGAAUGAAGCCUGGUCCGGA   359

2.5 PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15-like (LOC104742717), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010481412.2
ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1
  **||||||||||||||||||=*
targets:1326   CUGGAAUGAAGCCUGGUCCGGA   1347

2.5 PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15 (LOC104758530), mRNA NA coding protein psRNATarget
XM_010463749.2
ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1
  **||||||||||||||||||=*
targets:1379   CUGGAAUGAAGCCUGGUCCGGA   1400

2.5 PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15-like (LOC104742717), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010502505.1
ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1
  **||||||||||||||||||=*
targets:1407   CUGGAAUGAAGCCUGGUCCGGA   1428

2.5 PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15-like (LOC104778134), mRNA NA coding protein psRNATarget
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