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BaseInfo

ncRNA ID novel_csa_miR67
Species Camelina sativa
Class miRNA
Genome position Chr11:44792569-44792662 [+]
Reference genome Cs
Source SRR1736515
Length 21
Mature sequence(if miRNA) 1 - AAGCUCAGGAGGGAUAGCGCC - 21
Stem-loop(if miRNA) --A         G           UGACU     --    U       UU
   AGCUCAGGA GGAUAGCGCCA     CAACA  ACAU UGUAUGU  G
   ||||||||| |||||||||||     |||||  |||| |||||||
   UUGAGUCCU CCUAUCGCGGU     GUUGU  UGUA ACAUAUA  C
ACC         A           ----U     UA    U       UA
Stem-loop sequence AAGCUCAGGAGGGAUAGCGCCAUGACUCAACAACAUUUGUAUGUUUGCAUAUAUACAUAUGUAUUGUUGUUGGCGCUAUCCAUCCUGAGUUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010517462.2
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  *||||*|||||*|||||||||
targets:2949   UGCGCAAUCCCGCCUGAGCUU   2969

2.5 PREDICTED: Camelina sativa serine/threonine-protein kinase KIPK1 (LOC104791546), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010517463.2
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  *||||*|||||*|||||||||
targets:2957   UGCGCAAUCCCGCCUGAGCUU   2977

2.5 PREDICTED: Camelina sativa serine/threonine-protein kinase KIPK1 (LOC104791546), transcript variant X2, mRNA NA coding protein psRNATarget