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BaseInfo

ncRNA ID	novel_csa_miR66
Species	Camelina sativa
Class	miRNA
Genome position	Chr20:28839118-28839202 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	65 - AUGCCUGGCUCCCUGUAUGCC - 85
Stem-loop(if miRNA)	--    C       C          GA UG AUA         A   AUGC UGGCUCC UGUAUGCCAC  G  G   CCGAUUUUA U   |||| ||||||| ||||||||||  |  |   |||||||||   UACG ACCGAGG GCAUGCGGUG  C  C   GGCUAAAAU U AG    A       A          AC GU ---         U
Stem-loop sequence	AUGCCUGGCUCCCUGUAUGCCACGAGUGGAUACCGAUUUUAAUUUUAAAAUCGGCUGCCAGUGGCGUACGAGGAGCCAAGCAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010430568.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   |||||=||||||||||||||| targets:1587   GGCAUGCAGGGAGCCAGGCAU   1607 Target Full Sequence	1.0	PREDICTED: Camelina sativa auxin response factor 17-like (LOC104713460), mRNA	NA	coding protein	psRNATarget
XM_010473682.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   |||||=||||||||||||||* targets:1562   GGCAUGCAGGGAGCCAGGCAA   1582 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 17-like (LOC104751681), mRNA	NA	coding protein	psRNATarget
XM_010418440.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   |||||=||||||||||||||* targets:1571   GGCAUGCAGGGAGCCAGGCAA   1591 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 17-like (LOC104702568), mRNA	NA	coding protein	psRNATarget
GAFB01027148.1	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||=*||||||||||||||||| targets:520   GGUUUACAGGGAGCCAGGCAU   540 Target Full Sequence	2.0	TSA: Camelina sativa Locus_8437_Transcript_1/3_Confidence_0.333_Length_784 mRNA sequence	NA	coding protein	psRNATarget
GAFB01027149.1	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||=*||||||||||||||||| targets:520   GGUUUACAGGGAGCCAGGCAU   540 Target Full Sequence	2.0	TSA: Camelina sativa Locus_8437_Transcript_2/3_Confidence_0.667_Length_1396 mRNA sequence	NA	coding protein	psRNATarget
GAFB01027150.1	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||=*||||||||||||||||| targets:520   GGUUUACAGGGAGCCAGGCAU   540 Target Full Sequence	2.0	TSA: Camelina sativa Locus_8437_Transcript_3/3_Confidence_0.667_Length_1396 mRNA sequence	NA	coding protein	psRNATarget
XM_010434729.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||=*||||||||||||||||| targets:1561   GGUUUACAGGGAGCCAGGCAU   1581 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 16-like (LOC104717194), mRNA	NA	coding protein	psRNATarget
XM_010449470.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||=*||||||||||||||||| targets:1584   GGUUUACAGGGAGCCAGGCAU   1604 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 16 (LOC104730315), mRNA	NA	coding protein	psRNATarget
XM_010439919.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||=*||||||||||||||||| targets:1564   GGUUUACAGGGAGCCAGGCAU   1584 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 16 (LOC104721852), mRNA	NA	coding protein	psRNATarget
GAFB01026423.1	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||*|||||||||||||||||* targets:20   GGGAUACAGGGAGCCAGGCAA   40 Target Full Sequence	2.0	TSA: Camelina sativa Locus_8106_Transcript_1/2_Confidence_0.750_Length_900 mRNA sequence	NA	coding protein	psRNATarget
GAFB01026424.1	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||*|||||||||||||||||* targets:20   GGGAUACAGGGAGCCAGGCAA   40 Target Full Sequence	2.0	TSA: Camelina sativa Locus_8106_Transcript_2/2_Confidence_0.750_Length_930 mRNA sequence	NA	coding protein	psRNATarget
XM_010471795.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||*|||||||||||||||||* targets:1707   GGGAUACAGGGAGCCAGGCAA   1727 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 10-like (LOC104750063), mRNA	NA	coding protein	psRNATarget
XM_010416238.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||*|||||||||||||||||* targets:1653   GGGAUACAGGGAGCCAGGCAA   1673 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 10-like (LOC104700695), mRNA	NA	coding protein	psRNATarget
XM_019245924.1	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||*|||||||||||||||||* targets:1698   GGGAUACAGGGAGCCAGGCAA   1718 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 10 (LOC104786880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010512333.2	ncRNA:21   CCGUAUGUCCCUCGGUCCGUA   1   ||*|||||||||||||||||* targets:1695   GGGAUACAGGGAGCCAGGCAA   1715 Target Full Sequence	2.0	PREDICTED: Camelina sativa auxin response factor 10 (LOC104786880), transcript variant X1, mRNA	NA	coding protein	psRNATarget