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BaseInfo

ncRNA ID	novel_csa_miR60
Species	Camelina sativa
Class	miRNA
Genome position	Chr19:1536797-1536853 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - UUCUUCCUCCUUGUUCCUUCU - 21
Stem-loop(if miRNA)	--          AAAA        CAGA   AAGGAACAAG    AAGAAUCA    U   ||||||||||    ||||||||    U   UUCCUUGUUC    UUCUUAGU    U UC          CUCC        AAUA
Stem-loop sequence	AAGGAACAAGAAAAAAGAAUCACAGAUUUAUAAUGAUUCUUCCUCCUUGUUCCUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019242476.1	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   ||||||||*|||||||||||* targets:1287   AGAAGGAAGAAGGAGGAAGAC   1307 Target Full Sequence	2.5	PREDICTED: Camelina sativa elongation factor Tu, chloroplastic-like (LOC104771635), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GAFB01014871.1	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   ||||||||*|||||||||||* targets:1214   AGAAGGAAGAAGGAGGAAGAC   1234 Target Full Sequence	2.5	TSA: Camelina sativa Locus_3865_Transcript_2/2_Confidence_0.833_Length_1619 mRNA sequence	NA	coding protein	psRNATarget
GAFB01014870.1	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   ||||||||*|||||||||||* targets:1214   AGAAGGAAGAAGGAGGAAGAC   1234 Target Full Sequence	2.5	TSA: Camelina sativa Locus_3865_Transcript_1/2_Confidence_0.833_Length_1619 mRNA sequence	NA	coding protein	psRNATarget
XM_010483375.2	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   ||||||||*|||||||||||* targets:1265   AGAAGGAAGAAGGAGGAAGAC   1285 Target Full Sequence	2.5	PREDICTED: Camelina sativa elongation factor Tu, chloroplastic (LOC104760449), mRNA	NA	coding protein	psRNATarget
XM_010496193.2	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   ||||||||*|||||||||||* targets:1287   AGAAGGAAGAAGGAGGAAGAC   1307 Target Full Sequence	2.5	PREDICTED: Camelina sativa elongation factor Tu, chloroplastic-like (LOC104771635), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010452045.2	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   |||||*||||||||*|||||| targets:926   AGAAGAAACAAGGAAGAAGAA   946 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein OS-9 homolog (LOC104732498), mRNA	NA	coding protein	psRNATarget
XM_010442390.2	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   |||||*||||||||*|||||| targets:875   AGAAGAAACAAGGAAGAAGAA   895 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein OS-9 homolog (LOC104723960), mRNA	NA	coding protein	psRNATarget
GAFB01021727.1	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   |||||*||||||||*|||||| targets:868   AGAAGAAACAAGGAAGAAGAA   888 Target Full Sequence	2.5	TSA: Camelina sativa Locus_6125_Transcript_2/3_Confidence_0.667_Length_1195 mRNA sequence	NA	coding protein	psRNATarget
GAFB01021726.1	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   |||||*||||||||*|||||| targets:913   AGAAGAAACAAGGAAGAAGAA   933 Target Full Sequence	2.5	TSA: Camelina sativa Locus_6125_Transcript_1/3_Confidence_0.667_Length_1228 mRNA sequence	NA	coding protein	psRNATarget
GAFB01021728.1	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   |||||*||||||||*|||||| targets:913   AGAAGAAACAAGGAAGAAGAA   933 Target Full Sequence	2.5	TSA: Camelina sativa Locus_6125_Transcript_3/3_Confidence_0.667_Length_1240 mRNA sequence	NA	coding protein	psRNATarget
XM_010437092.2	ncRNA:21   UCUUCCUUGUUCCUCCUUCUU   1   |||||*||||||||*|||||| targets:931   AGAAGAAACAAGGAAGAAGAA   951 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein OS-9 homolog (LOC104719229), transcript variant X1, mRNA	NA	coding protein	psRNATarget