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BaseInfo

ncRNA ID novel_csa_miR58
Species Camelina sativa
Class miRNA
Genome position Chr17:27420514-27420602 [+]
Reference genome Cs
Source SRR1736515
Length 21
Mature sequence(if miRNA) 1 - UGAAAGUGACUACAUCGGGGC - 21
Stem-loop(if miRNA) --    A       C         UU    UUA  UU   --   GU
  UGAA GUGACUA AUCGGGGCU  GAUU   UC  UUG  UCG  C
  |||| ||||||| |||||||||  ||||   ||  |||  |||
  ACUU CACUGAU UGGCCCCGA  CUAA   AG  AAC  AGC  U
UC    C       U         --    -UA  CU   CU   AC
Stem-loop sequence UGAAAGUGACUACAUCGGGGCUUUGAUUUUAUCUUUUGUCGGUCUCACGAUCCAAUCGAAUAAUCAGCCCCGGUUUAGUCACCUUCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019237874.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||||||||||||
targets:692   ACCCUGAUGUAGUCACUUUCA   712

1.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63400-like (LOC109129558), mRNA NA coding protein psRNATarget
XM_010421160.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||||||||||||
targets:545   ACCCUGAUGUAGUCACUUUCA   565

1.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63400-like (LOC104705187), mRNA NA coding protein psRNATarget
XM_019230130.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||||||||||||
targets:566   ACCCUGAUGUAGUCACUUUCA   586

1.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC104714603), mRNA NA coding protein psRNATarget
XM_010419850.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||||||||||||
targets:728   ACCCUGAUGUAGUCACUUUCA   748

1.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC104703774), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019227577.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||||||||||||
targets:770   ACCCUGAUGUAGUCACUUUCA   790

1.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC104703774), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019239576.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *||||||||||||||||||=|
targets:1080   ACCCCGAUGUAGUCACUUUUA   1100

1.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104758957), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019227210.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||**|||||||||||||||
targets:935   ACCCAAAUGUAGUCACUUUCA   955

2.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like (LOC104705192), mRNA NA coding protein psRNATarget
XM_019232214.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||**|||||||||||||||
targets:950   ACCCAAAUGUAGUCACUUUCA   970

2.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104728527), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010419992.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||**|||||||||||||||
targets:950   ACCCAAAUGUAGUCACUUUCA   970

2.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC104703901), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019232213.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||**|||||||||||||||
targets:950   ACCCAAAUGUAGUCACUUUCA   970

2.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104728527), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019232212.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||**|||||||||||||||
targets:962   ACCCAAAUGUAGUCACUUUCA   982

2.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104728527), transcript variant X1, mRNA NA coding protein psRNATarget
GAFB01050457.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=|||||*||||||||||
targets:49   ACCCUGAUGUUGUCACUUUCA   69

2.5 TSA: Camelina sativa Locus_24832_Transcript_1/1_Confidence_1.000_Length_521 mRNA sequence NA coding protein psRNATarget
XM_010432032.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||*|||||||||
targets:845   ACCCUGAUGUAAUCACUUUCA   865

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC104714606), mRNA NA coding protein psRNATarget
XM_010432130.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *||||*|||||||=|||||||
targets:965   ACCCCAAUGUAGUUACUUUCA   985

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC104714693), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019229780.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=|||||*||||||||||
targets:993   ACCCUGAUGUUGUCACUUUCA   1013

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g64583, mitochondrial (LOC104714826), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019229779.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=|||||*||||||||||
targets:1098   ACCCUGAUGUUGUCACUUUCA   1118

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g64583, mitochondrial (LOC104714826), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010448850.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||*|||||||||
targets:908   ACCCUGAUGUAAUCACUUUCA   928

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g41170, mitochondrial-like (LOC104729830), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010448859.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||*|||||||||
targets:908   ACCCUGAUGUAAUCACUUUCA   928

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g41170, mitochondrial-like (LOC104729830), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010420231.2
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=|||||*||||||||||
targets:1146   ACCCUGAUGUUGUCACUUUCA   1166

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like (LOC104704095), mRNA NA coding protein psRNATarget
XM_010437765.2
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||*|||||||||
targets:811   ACCCUGAUGUAAUCACUUUCA   831

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g41170, mitochondrial (LOC104719789), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010437762.2
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||*|||||||||
targets:924   ACCCUGAUGUAAUCACUUUCA   944

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g41170, mitochondrial (LOC104719789), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010437763.2
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *|||=||||||*|||||||||
targets:924   ACCCUGAUGUAAUCACUUUCA   944

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g41170, mitochondrial (LOC104719789), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010495744.2
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  **||*||||||||*|||||||
targets:1243   AGCCAGAUGUAGUGACUUUCA   1263

2.5 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g27110-like (LOC104771244), mRNA NA coding protein psRNATarget
XM_010421162.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  |=||=*=||||||||||||||
targets:929   GUCCUAGUGUAGUCACUUUCA   949

3.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like (LOC104705188), mRNA NA coding protein psRNATarget
XM_010486515.1
ncRNA:21   CGGGGCUACAUCAGUGAAAGU   1
  *||==*|||||||||||||||
targets:815   ACCUUAAUGUAGUCACUUUCA   835

3.0 PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g62590-like (LOC104763101), mRNA NA coding protein psRNATarget
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