Search result

BaseInfo

ncRNA ID ath-miRf10840-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - GUGAUGUCCUCUACUCGACCAGG - NA
Stem-loop(if miRNA)     -AA   --  G     -CU           G          -----------     U
GGUG   GUA  GU AUGUC   CUACUCGACCA GGGGUCGAGU           GAUCU U
||||   |||  || |||||   ||||||||||| ||||||||||           |||||
CUAC   CGU  UA UACAG   GGUGAGCUGGU CUCCAGCUCA           CUAGA U
    GCC   AC  G     UUU           G          UCCUCGAAGUU     G
Stem-loop sequence GGUGAAGUAGUGAUGUCCUCUACUCGACCAGGGGGUCGAGUGAUCUUUUGAGAUCUUGAAGCUCCUACUCGACCUCGUGGUCGAGUGGUUUGACAUGAUCAUGCCCGCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183042.1
ncRNA:23   GGACCAGCUCAUCUCCUGUAGUG   1
  |||||||||||||||||||||||
targets:1582   CCUGGUCGAGUAGAGGACAUCAC   1604

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
EF183194.1
ncRNA:23   GGACCAGCUCAUCUCCUGUAGUG   1
  ||*|||||||||||*||||||||
targets:460   CCAGGUCGAGUAGAAGACAUCAC   482

1.5 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:23   GGACCAGCUCAUCUCCUGUAGUG   1
  ||*||||||||||||*|||||||
targets:819   CCAGGUCGAGUAGAGCACAUCAC   841

1.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget