ncRNA ID | ath-miRf10840-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 23 |
Mature sequence(if miRNA) | NA - GUGAUGUCCUCUACUCGACCAGG - NA |
Stem-loop(if miRNA) |
    -AA   --  G     -CU           G          -----------     U GGUG   GUA  GU AUGUC   CUACUCGACCA GGGGUCGAGU           GAUCU U ||||   |||  || |||||   ||||||||||| ||||||||||           ||||| CUAC   CGU  UA UACAG   GGUGAGCUGGU CUCCAGCUCA           CUAGA U     GCC   AC  G     UUU           G          UCCUCGAAGUU     G |
Stem-loop sequence | GGUGAAGUAGUGAUGUCCUCUACUCGACCAGGGGGUCGAGUGAUCUUUUGAGAUCUUGAAGCUCCUACUCGACCUCGUGGUCGAGUGGUUUGACAUGAUCAUGCCCGCAUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EF183042.1 |
|
0.0 | Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence | NA | coding protein | psRNATarget | |||||||||
EF183194.1 |
|
1.5 | Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence | NA | coding protein | psRNATarget | |||||||||
AY227642.1 |
|
1.5 | Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds | NA | coding protein | psRNATarget |