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BaseInfo

ncRNA ID	novel_csa_miR49
Species	Camelina sativa
Class	miRNA
Genome position	Chr16:8389544-8389683 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	120 - AGGAUUCGAGAACGGCAAAUC - 140
Stem-loop(if miRNA)	--                              -   -------UCAUC   GUGAAAGAGUACGGCCCAAUACA   AGGAUUCGAGAACGGCAAAUCGGUUCUUGG UCG            GCU                       U   |||||||||||||||||||||||||||||| |||            |||   UCCUAAGCUCUUGCCGUUUAGCCAAGAACC GGC            UCG                       U CG                              C   UAAUAUCUCAAC   AAGCUAAUAUAAUCCCGAAACCU
Stem-loop sequence	AGGAUUCGAGAACGGCAAAUCGGUUCUUGGUCGUCAUCGCUGUGAAAGAGUACGGCCCAAUACAUUUCCAAAGCCCUAAUAUAAUCGAAGCUCAACUCUAUAAUCGGCCCAAGAACCGAUUUGCCGUUCUCGAAUCCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010471928.2	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||||||||||||||||| targets:2   GAUUUGCCGUUCUCGAAUCCU   22 Target Full Sequence	0.0	PREDICTED: Camelina sativa uncharacterized protein KIAA0930 homolog (LOC104750170), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_010471927.2	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||||||||||||||||| targets:5   GAUUUGCCGUUCUCGAAUCCU   25 Target Full Sequence	0.0	PREDICTED: Camelina sativa uncharacterized protein KIAA0930 homolog (LOC104750170), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010471926.2	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||||||||||||||||| targets:3   GAUUUGCCGUUCUCGAAUCCU   23 Target Full Sequence	0.0	PREDICTED: Camelina sativa uncharacterized protein KIAA0930 homolog (LOC104750170), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019245255.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   |||||||*|*||||||||||| targets:1079   GAUUUGCAGCUCUCGAAUCCU   1099 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized mitochondrial protein AtMg00810-like (LOC109132832), mRNA	NA	coding protein	psRNATarget
GAFB01019668.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1319   GAUUUGAAGUUCUCGAAUCCG   1339 Target Full Sequence	3.0	TSA: Camelina sativa Locus_5373_Transcript_2/7_Confidence_0.529_Length_2028 mRNA sequence	NA	coding protein	psRNATarget
GAFB01019673.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1319   GAUUUGAAGUUCUCGAAUCCG   1339 Target Full Sequence	3.0	TSA: Camelina sativa Locus_5373_Transcript_7/7_Confidence_0.529_Length_2028 mRNA sequence	NA	coding protein	psRNATarget
GAFB01019672.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1319   GAUUUGAAGUUCUCGAAUCCG   1339 Target Full Sequence	3.0	TSA: Camelina sativa Locus_5373_Transcript_6/7_Confidence_0.471_Length_2034 mRNA sequence	NA	coding protein	psRNATarget
GAFB01019670.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1465   GAUUUGAAGUUCUCGAAUCCG   1485 Target Full Sequence	3.0	TSA: Camelina sativa Locus_5373_Transcript_4/7_Confidence_0.588_Length_2174 mRNA sequence	NA	coding protein	psRNATarget
GAFB01019671.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1465   GAUUUGAAGUUCUCGAAUCCG   1485 Target Full Sequence	3.0	TSA: Camelina sativa Locus_5373_Transcript_5/7_Confidence_0.588_Length_2174 mRNA sequence	NA	coding protein	psRNATarget
XM_010465881.2	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1750   GAUUUGAAGUUCUCGAAUCCG   1770 Target Full Sequence	3.0	PREDICTED: Camelina sativa uncharacterized LOC104744780 (LOC104744780), mRNA	NA	coding protein	psRNATarget
XM_019244685.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1787   GAUUUGAAGUUCUCGAAUCCG   1807 Target Full Sequence	3.0	PREDICTED: Camelina sativa uncharacterized LOC104720241 (LOC104720241), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019244684.1	ncRNA:21   CUAAACGGCAAGAGCUUAGGA   1   ||||||**||||||||||||* targets:1799   GAUUUGAAGUUCUCGAAUCCG   1819 Target Full Sequence	3.0	PREDICTED: Camelina sativa uncharacterized LOC104720241 (LOC104720241), transcript variant X1, mRNA	NA	coding protein	psRNATarget