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BaseInfo

ncRNA ID novel_csa_miR43
Species Camelina sativa
Class miRNA
Genome position Chr15:14247856-14247962 [+]
Reference genome Cs
Source SRR1736515
Length 21
Mature sequence(if miRNA) 87 - GAUCAUGUUCGCAGUUUCACC - 107
Stem-loop(if miRNA) --         C              A   ----U       UAU       UG U
  UGAAGCUGC AGCAUGAUCUAAUU GAU     UCUUUUA   CCGUUGU  U U
  ||||||||| |||||||||||||| |||     |||||||   |||||||  | U
  ACUUUGACG UUGUACUAGAUUAG CUG     AGAGAAU   GGUAGCA  G U
CC         C              -   UGAGU       -UU       GU C
Stem-loop sequence UGAAGCUGCCAGCAUGAUCUAAUUAGAUUUCUUUUAUAUCCGUUGUUGUUUUUCGUGACGAUGGUUUAAGAGAUGAGUGUCGAUUAGAUCAUGUUCGCAGUUUCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GAFB01002656.1
ncRNA:21   CCACUUUGACGCUUGUACUAG   1
  **||==|*|||||||||||||
targets:1517   UCUGGGAAUGCGAACAUGAUC   1537

3.0 TSA: Camelina sativa Locus_594_Transcript_4/5_Confidence_0.583_Length_2415 mRNA sequence NA coding protein psRNATarget
GAFB01002654.1
ncRNA:21   CCACUUUGACGCUUGUACUAG   1
  **||==|*|||||||||||||
targets:1517   UCUGGGAAUGCGAACAUGAUC   1537

3.0 TSA: Camelina sativa Locus_594_Transcript_2/5_Confidence_0.583_Length_2422 mRNA sequence NA coding protein psRNATarget
GAFB01002655.1
ncRNA:21   CCACUUUGACGCUUGUACUAG   1
  **||==|*|||||||||||||
targets:1517   UCUGGGAAUGCGAACAUGAUC   1537

3.0 TSA: Camelina sativa Locus_594_Transcript_3/5_Confidence_0.583_Length_2422 mRNA sequence NA coding protein psRNATarget
GAFB01002653.1
ncRNA:21   CCACUUUGACGCUUGUACUAG   1
  **||==|*|||||||||||||
targets:1517   UCUGGGAAUGCGAACAUGAUC   1537

3.0 TSA: Camelina sativa Locus_594_Transcript_1/5_Confidence_0.667_Length_2422 mRNA sequence NA coding protein psRNATarget
GAFB01002657.1
ncRNA:21   CCACUUUGACGCUUGUACUAG   1
  **||==|*|||||||||||||
targets:1517   UCUGGGAAUGCGAACAUGAUC   1537

3.0 TSA: Camelina sativa Locus_594_Transcript_5/5_Confidence_0.583_Length_2422 mRNA sequence NA coding protein psRNATarget
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