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BaseInfo

ncRNA ID	novel_csa_miR30
Species	Camelina sativa
Class	miRNA
Genome position	Chr14:421558-421688 [+]
Reference genome	Cs
Source	SRR1736515;SRR1736515
Length	21
Mature sequence(if miRNA)	111 - UCGGACCAGGCUUCAUCCCCC - 131
Stem-loop(if miRNA)	--  A   UU      A           AUA      GACACACGUAUAAG       C       U G  A   GG AUG  GUCUGG UCGAGGAUAUU   UAUACA              AUAUAUA AUGUAUG U AU C   || |||  |||||| |||||||||||   ||||||              ||||||| ||||||| | ||   CC UAC  CGGACC GGCUCCUAUGA   AUAUGU              UAUAUAU UAUAUAC A UG A CC  C   UU      A           GAG      -------------A       A       U G  A
Stem-loop sequence	GGAAUGUUGUCUGGAUCGAGGAUAUUAUAUAUACAGACACACGUAUAAGAUAUAUACAUGUAUGUUGAUACAAGUGAUCAUAUAUAUAUAUAUAUGUAUAGAGAGUAUCCUCGGACCAGGCUUCAUCCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010486966.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:545   CUGGGAUGAAGCCUGGUCCGG   565 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein REVOLUTA-like (LOC104763613), mRNA	NA	coding protein	psRNATarget
XM_019238937.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:877   UUGGGAUGAAGCCUGGUCCGG   897 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-9-like (LOC104759547), partial mRNA	NA	coding protein	psRNATarget
GAFB01006981.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_2/10_Confidence_0.306_Length_2573 mRNA sequence	NA	coding protein	psRNATarget
GAFB01006980.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_1/10_Confidence_0.306_Length_2573 mRNA sequence	NA	coding protein	psRNATarget
GAFB01006985.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_6/10_Confidence_0.333_Length_2573 mRNA sequence	NA	coding protein	psRNATarget
GAFB01006988.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_9/10_Confidence_0.306_Length_2573 mRNA sequence	NA	coding protein	psRNATarget
GAFB01006986.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_7/10_Confidence_0.389_Length_2608 mRNA sequence	NA	coding protein	psRNATarget
XM_019233018.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:547   CUGGGAUGAAGCCUGGUCCGG   567 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein REVOLUTA-like (LOC104726659), mRNA	NA	coding protein	psRNATarget
GAFB01006983.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_4/10_Confidence_0.417_Length_2682 mRNA sequence	NA	coding protein	psRNATarget
GAFB01006982.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_3/10_Confidence_0.417_Length_2687 mRNA sequence	NA	coding protein	psRNATarget
GAFB01006984.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_5/10_Confidence_0.417_Length_2687 mRNA sequence	NA	coding protein	psRNATarget
GAFB01006989.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:546   UUGGGAUGAAGCCUGGUCCGG   566 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_10/10_Confidence_0.417_Length_2687 mRNA sequence	NA	coding protein	psRNATarget
XM_010439538.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:974   AUGGGAUGAAGCCUGGUCCGG   994 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8-like (LOC104721532), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010439537.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:977   AUGGGAUGAAGCCUGGUCCGG   997 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8-like (LOC104721532), transcript variant X3, mRNA	NA	coding protein	psRNATarget
GAFB01012823.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:924   CUGGGAUGAAGCCUGGUCCGG   944 Target Full Sequence	1.0	TSA: Camelina sativa Locus_3260_Transcript_2/5_Confidence_0.714_Length_2938 mRNA sequence	NA	coding protein	psRNATarget
GAFB01012825.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:924   CUGGGAUGAAGCCUGGUCCGG   944 Target Full Sequence	1.0	TSA: Camelina sativa Locus_3260_Transcript_4/5_Confidence_0.643_Length_2938 mRNA sequence	NA	coding protein	psRNATarget
GAFB01012826.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:924   CUGGGAUGAAGCCUGGUCCGG   944 Target Full Sequence	1.0	TSA: Camelina sativa Locus_3260_Transcript_5/5_Confidence_0.643_Length_2938 mRNA sequence	NA	coding protein	psRNATarget
GAFB01012822.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:924   CUGGGAUGAAGCCUGGUCCGG   944 Target Full Sequence	1.0	TSA: Camelina sativa Locus_3260_Transcript_1/5_Confidence_0.643_Length_2938 mRNA sequence	NA	coding protein	psRNATarget
GAFB01012824.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:926   CUGGGAUGAAGCCUGGUCCGG   946 Target Full Sequence	1.0	TSA: Camelina sativa Locus_3260_Transcript_3/5_Confidence_0.643_Length_2940 mRNA sequence	NA	coding protein	psRNATarget
XM_010439536.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:975   AUGGGAUGAAGCCUGGUCCGG   995 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8-like (LOC104721532), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010434342.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1027   CUGGGAUGAAGCCUGGUCCGG   1047 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8 (LOC104716880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GAFB01006987.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:888   UUGGGAUGAAGCCUGGUCCGG   908 Target Full Sequence	1.0	TSA: Camelina sativa Locus_1649_Transcript_8/10_Confidence_0.444_Length_3029 mRNA sequence	NA	coding protein	psRNATarget
XM_019230490.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1030   CUGGGAUGAAGCCUGGUCCGG   1050 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8 (LOC104716880), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010439535.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:978   AUGGGAUGAAGCCUGGUCCGG   998 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8-like (LOC104721532), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010434341.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1029   CUGGGAUGAAGCCUGGUCCGG   1049 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8 (LOC104716880), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019243743.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:919   UUGGGAUGAAGCCUGGUCCGG   939 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-9-like (LOC104777076), mRNA	NA	coding protein	psRNATarget
XM_010462545.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:923   UUGGGAUGAAGCCUGGUCCGG   943 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-9 (LOC104741649), mRNA	NA	coding protein	psRNATarget
XM_010511418.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:918   UUGGGAUGAAGCCUGGUCCGG   938 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-14 (LOC104786086), mRNA	NA	coding protein	psRNATarget
XM_010506640.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:942   UUGGGAUGAAGCCUGGUCCGG   962 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-14 (LOC104781869), mRNA	NA	coding protein	psRNATarget
XM_010518324.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:966   UUGGGAUGAAGCCUGGUCCGG   986 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-14-like (LOC104792228), mRNA	NA	coding protein	psRNATarget
XM_010449024.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:999   CUGGGAUGAAGCCUGGUCCGG   1019 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8-like (LOC104729978), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010449023.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1002   CUGGGAUGAAGCCUGGUCCGG   1022 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-8-like (LOC104729978), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010458377.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1296   CUGGGAUGAAGCCUGGUCCGG   1316 Target Full Sequence	1.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein REVOLUTA (LOC104738152), mRNA	NA	coding protein	psRNATarget
XM_010463750.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:338   CUGGAAUGAAGCCUGGUCCGG   358 Target Full Sequence	2.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15-like (LOC104742717), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010481412.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1326   CUGGAAUGAAGCCUGGUCCGG   1346 Target Full Sequence	2.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15 (LOC104758530), mRNA	NA	coding protein	psRNATarget
XM_010463749.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1379   CUGGAAUGAAGCCUGGUCCGG   1399 Target Full Sequence	2.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15-like (LOC104742717), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010502505.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1407   CUGGAAUGAAGCCUGGUCCGG   1427 Target Full Sequence	2.0	PREDICTED: Camelina sativa homeobox-leucine zipper protein ATHB-15-like (LOC104778134), mRNA	NA	coding protein	psRNATarget