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BaseInfo

ncRNA ID novel_csa_miR23
Species Camelina sativa
Class miRNA
Genome position Chr13:14191933-14192017 [-]
Reference genome Cs
Source SRR1736515
Length 20
Mature sequence(if miRNA) 66 - UGGAGAAGCAGGGCACGUGC - 85
Stem-loop(if miRNA) --     A  C             ACACAAA  A       CGG
  UGGAG AG AGGGCACGUGCGA       UG GAUCGAU   U
  ||||| || |||||||||||||       || |||||||
  ACCUC UC UCUUGUGCACGCU       AU UUAGUUG   A
CA     A  A             ---AUUG  A       UGA
Stem-loop sequence UGGAGAAGCAGGGCACGUGCGAACACAAAUGAGAUCGAUCGGUAAGUGUUGAUUAUAGUUAUCGCACGUGUUCUACUACUCCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GABO01009766.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:215   CUACGUGCCCUGCUUCUCCA   234

1.0 TSA: Camelina sativa Unigene10176_WT mRNA sequence NA coding protein psRNATarget
GAFB01045415.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:664   UUACGUGCCCUGCUUCUCCA   683

1.0 TSA: Camelina sativa Locus_19360_Transcript_1/1_Confidence_1.000_Length_989 mRNA sequence NA coding protein psRNATarget
XM_010459026.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:917   CUACGUGCCCUGCUUCUCCA   936

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 100-like (LOC104738815), mRNA NA coding protein psRNATarget
XM_010493085.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:860   UUACGUGCCCUGCUUCUCCA   879

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 79-like (LOC104768977), mRNA NA coding protein psRNATarget
XM_010454433.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:883   UUACGUGCCCUGCUUCUCCA   902

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 79-like (LOC104734791), mRNA NA coding protein psRNATarget
XM_010485508.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:891   CUACGUGCCCUGCUUCUCCA   910

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 100-like (LOC104762257), mRNA NA coding protein psRNATarget
XM_010424877.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:899   UUACGUGCCCUGCUUCUCCA   918

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 79 (LOC104708327), mRNA NA coding protein psRNATarget
XM_010445662.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *=||||||||||||||||||
targets:912   CUACGUGCCCUGCUUCUCCA   931

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 100 (LOC104726731), mRNA NA coding protein psRNATarget
GAFB01027252.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  ||||||*|||||||||||||
targets:778   GCACGUACCCUGCUUCUCCA   797

1.0 TSA: Camelina sativa Locus_8484_Transcript_2/2_Confidence_0.750_Length_1210 mRNA sequence NA coding protein psRNATarget
GAFB01027251.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  ||||||*|||||||||||||
targets:778   GCACGUACCCUGCUUCUCCA   797

1.0 TSA: Camelina sativa Locus_8484_Transcript_1/2_Confidence_0.750_Length_1213 mRNA sequence NA coding protein psRNATarget
XM_010464167.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  ||||||*|||||||||||||
targets:817   GCACGUACCCUGCUUCUCCA   836

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 21/22 (LOC104743042), mRNA NA coding protein psRNATarget
XM_010481859.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  ||||||*|||||||||||||
targets:863   GCACGUACCCUGCUUCUCCA   882

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 21/22-like (LOC104758892), mRNA NA coding protein psRNATarget
XM_010502930.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  ||||||*|||||||||||||
targets:957   GCACGUACCCUGCUUCUCCA   976

1.0 PREDICTED: Camelina sativa NAC domain-containing protein 21/22 (LOC104778471), mRNA NA coding protein psRNATarget
XM_010488733.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  ||*|||*|||||||||||||
targets:702   GCCCGUACCCUGCUUCUCCA   721

2.0 PREDICTED: Camelina sativa NAC domain-containing protein 21/22-like (LOC104765069), mRNA NA coding protein psRNATarget
XM_010501424.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  ||*|||*|||||||||||||
targets:679   GCCCGUACCCUGCUUCUCCA   698

2.0 PREDICTED: Camelina sativa NAC domain-containing protein 21/22-like (LOC104777208), mRNA NA coding protein psRNATarget
GABO01002123.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:5   UCACGUGACCUGCUUCUCCG   24

2.5 TSA: Camelina sativa Unigene2152_WT mRNA sequence NA coding protein psRNATarget
XM_010453515.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:513   UCACGUGACCUGCUUCUCCG   532

2.5 PREDICTED: Camelina sativa NAC domain-containing protein 92-like (LOC104733999), partial mRNA NA coding protein psRNATarget
GAFB01042454.1
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:649   UCACGUGACCUGCUUCUCCG   668

2.5 TSA: Camelina sativa Locus_16946_Transcript_1/1_Confidence_1.000_Length_966 mRNA sequence NA coding protein psRNATarget
XM_010442774.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:945   UCACGUGACCUGCUUCUCCG   964

2.5 PREDICTED: Camelina sativa NAC domain-containing protein 92 (LOC104724312), mRNA NA coding protein psRNATarget
XM_010437571.2
ncRNA:20   CGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||=
targets:931   UCACGUGACCUGCUUCUCCG   950

2.5 PREDICTED: Camelina sativa NAC domain-containing protein 92 (LOC104719618), mRNA NA coding protein psRNATarget
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