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BaseInfo

ncRNA ID	novel_csa_miR13
Species	Camelina sativa
Class	miRNA
Genome position	Chr17:19090689-19090768 [+]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - AUAAAUCCCACGCAUCUUCCA - 21
Stem-loop(if miRNA)	--          C          CC    C  C     AA   AUAAAUCCCA GCAUCUUCCA  UUAC AG CUUGU  C   |||||||||| ||||||||||  |||| || |||||   UAUUUAGGGU CGUAGAAGGU  AAUG UC GAACG  C UU          U          AA    A  A     CU
Stem-loop sequence	AUAAAUCCCACGCAUCUUCCACCUUACCAGCCUUGUAACCUCGCAAGACUAGUAAAAUGGAAGAUGCUUGGGAUUUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010421190.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||||||*||||||||||||| targets:1575   UGGAAGAAGCGUGGGAUUUAU   1595 Target Full Sequence	1.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104705222), mRNA	NA	coding protein	psRNATarget
GAFB01036842.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ***|||||||||||||||||| targets:470   CUAAAGAUGCGUGGGAUUUAU   490 Target Full Sequence	1.0	TSA: Camelina sativa Locus_13219_Transcript_1/1_Confidence_1.000_Length_730 mRNA sequence	NA	coding protein	psRNATarget
XM_010500655.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ***|||||||||||||||||| targets:3392   CUAAAGAUGCGUGGGAUUUAU   3412 Target Full Sequence	1.0	PREDICTED: Camelina sativa disease resistance-like protein CSA1 (LOC104776558), mRNA	NA	coding protein	psRNATarget
XM_010479458.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ***|||||||||||||||||| targets:4019   CUAAAGAUGCGUGGGAUUUAU   4039 Target Full Sequence	1.0	PREDICTED: Camelina sativa disease resistance protein TAO1-like (LOC104756810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010479457.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ***|||||||||||||||||| targets:4034   CUAAAGAUGCGUGGGAUUUAU   4054 Target Full Sequence	1.0	PREDICTED: Camelina sativa disease resistance protein TAO1-like (LOC104756810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019228120.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||||||||||||||=||||| targets:1352   UGGAAGAUGCGUGGGGUUUAU   1372 Target Full Sequence	1.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC104705198), mRNA	NA	coding protein	psRNATarget
XM_010419966.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||||||||*||||||||||| targets:227   UGGAAGAUGGGUGGGAUUUAU   247 Target Full Sequence	1.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like (LOC104703877), mRNA	NA	coding protein	psRNATarget
XM_010501534.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||||||||*|||||||||| targets:565   UGGAAGAUGCUUGGGAUUUAU   585 Target Full Sequence	1.5	PREDICTED: Camelina sativa TPD1 protein homolog 1 (LOC104777310), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010501535.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||||||||*|||||||||| targets:598   UGGAAGAUGCUUGGGAUUUAU   618 Target Full Sequence	1.5	PREDICTED: Camelina sativa TPD1 protein homolog 1 (LOC104777310), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010501533.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||||||||*|||||||||| targets:617   UGGAAGAUGCUUGGGAUUUAU   637 Target Full Sequence	1.5	PREDICTED: Camelina sativa TPD1 protein homolog 1 (LOC104777310), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010480383.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||||||||*|||||||||| targets:527   UGGAAGAUGCUUGGGAUUUAU   547 Target Full Sequence	1.5	PREDICTED: Camelina sativa TPD1 protein homolog 1-like (LOC104757629), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010480382.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||||||||*|||||||||| targets:568   UGGAAGAUGCUUGGGAUUUAU   588 Target Full Sequence	1.5	PREDICTED: Camelina sativa TPD1 protein homolog 1-like (LOC104757629), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010480384.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||||||||*|||||||||| targets:675   UGGAAGAUGCUUGGGAUUUAU   695 Target Full Sequence	1.5	PREDICTED: Camelina sativa TPD1 protein homolog 1-like (LOC104757629), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019238799.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||||||||*|||||||||| targets:675   UGGAAGAUGCUUGGGAUUUAU   695 Target Full Sequence	1.5	PREDICTED: Camelina sativa TPD1 protein homolog 1-like (LOC104757629), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010483343.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:227   UGGGAGAAGCGUGGGAUUUAU   247 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC104760422), mRNA	NA	coding protein	psRNATarget
XM_019237880.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:812   UGGGAGAAGCGUGGGAUUUAU   832 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC109129561), mRNA	NA	coding protein	psRNATarget
XM_019238121.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1319   UGGGAGAAGCGUGGGAUUUAU   1339 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC104754145), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010420121.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1343   UGGGAGAAGCGUGGGAUUUAU   1363 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104704006), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010476289.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1400   UGGGAGAAGCGUGGGAUUUAU   1420 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like (LOC104754145), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019229693.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1434   UGGGAGAAGCGUGGGAUUUAU   1454 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104714736), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010432193.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1536   UGGGAGAAGCGUGGGAUUUAU   1556 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104714736), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010420120.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1544   UGGGAGAAGCGUGGGAUUUAU   1564 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104704006), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010432129.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1565   UGGGAGAAGCGUGGGAUUUAU   1585 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104714692), mRNA	NA	coding protein	psRNATarget
XM_019230133.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:1727   UGGGAGAAGCGUGGGAUUUAU   1747 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like (LOC104714658), mRNA	NA	coding protein	psRNATarget
XM_019227215.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||=|||*||||||||||||| targets:2060   UGGGAGAAGCGUGGGAUUUAU   2080 Target Full Sequence	2.0	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104705212), mRNA	NA	coding protein	psRNATarget
XM_019227215.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||||||*|*||||||||||| targets:287   UGGAAGAAGGGUGGGAUUUAU   307 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63330-like (LOC104705212), mRNA	NA	coding protein	psRNATarget
XM_019235287.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:301   UGGAUGAUGCUUGGGAUUUAU   321 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12620-like (LOC104743255), mRNA	NA	coding protein	psRNATarget
XM_019239694.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:509   UGGAUGAUGCUUGGGAUUUAU   529 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12620-like (LOC104771721), mRNA	NA	coding protein	psRNATarget
XM_019235284.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:383   UGGAUGAUGCUUGGGAUUUAU   403 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12620-like (LOC104739921), mRNA	NA	coding protein	psRNATarget
XM_010503261.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:1277   UGGAUGAUGCUUGGGAUUUAU   1297 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104778838), mRNA	NA	coding protein	psRNATarget
XM_019237878.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||||||*|*||||||||||| targets:1454   UGGAAGAAGGGUGGGAUUUAU   1474 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC104752972), mRNA	NA	coding protein	psRNATarget
XM_019229181.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||*||||||*|||||||||| targets:1286   UGGCAGAUGCUUGGGAUUUAU   1306 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g16640, mitochondrial (LOC104705956), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019239264.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:1574   UGGAUGAUGCUUGGGAUUUAU   1594 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104755542), mRNA	NA	coding protein	psRNATarget
XM_010455525.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||*||||||*|||||||||| targets:1384   UGGCAGAUGCUUGGGAUUUAU   1404 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g16640, mitochondrial-like (LOC104735697), mRNA	NA	coding protein	psRNATarget
XM_010477882.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:1723   UGGAUGAUGCUUGGGAUUUAU   1743 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104755487), mRNA	NA	coding protein	psRNATarget
XM_010460410.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:1623   UGGAUGAUGCUUGGGAUUUAU   1643 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104739930), mRNA	NA	coding protein	psRNATarget
XM_010494275.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||*||||||*|||||||||| targets:1287   UGGCAGAUGCUUGGGAUUUAU   1307 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g16640, mitochondrial (LOC104769947), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019229180.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||*||||||*|||||||||| targets:1418   UGGCAGAUGCUUGGGAUUUAU   1438 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g16640, mitochondrial (LOC104705956), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010477930.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:1641   UGGAUGAUGCUUGGGAUUUAU   1661 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12620-like (LOC104755530), mRNA	NA	coding protein	psRNATarget
XM_010494274.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |||*||||||*|||||||||| targets:1413   UGGCAGAUGCUUGGGAUUUAU   1433 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At5g16640, mitochondrial (LOC104769947), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010495544.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   ||||*|||||*|||||||||| targets:1648   UGGAUGAUGCUUGGGAUUUAU   1668 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104771066), mRNA	NA	coding protein	psRNATarget
XM_010460387.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |*||*|||||*|||||||||| targets:1639   UAGAUGAUGCUUGGGAUUUAU   1659 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104739907), mRNA	NA	coding protein	psRNATarget
XM_019243426.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |*||*|||||*|||||||||| targets:1590   UAGAUGAUGCUUGGGAUUUAU   1610 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12620-like (LOC104771695), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019235836.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |*||*|||||*|||||||||| targets:1691   UAGAUGAUGCUUGGGAUUUAU   1711 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104739927), mRNA	NA	coding protein	psRNATarget
XM_019243425.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |*||*|||||*|||||||||| targets:1681   UAGAUGAUGCUUGGGAUUUAU   1701 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12620-like (LOC104771695), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010477950.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |*||*|||||*|||||||||| targets:1778   UCGAUGAUGCUUGGGAUUUAU   1798 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104755552), mRNA	NA	coding protein	psRNATarget
XM_010496354.1	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |*||*|||||*|||||||||| targets:1629   UCGAUGAUGCUUGGGAUUUAU   1649 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC104771777), mRNA	NA	coding protein	psRNATarget
XM_010460416.2	ncRNA:21   ACCUUCUACGCACCCUAAAUA   1   |*||*|||||*|||||||||| targets:1601   UAGAUGAUGCUUGGGAUUUAU   1621 Target Full Sequence	2.5	PREDICTED: Camelina sativa pentatricopeptide repeat-containing protein At1g12300, mitochondrial (LOC104739936), mRNA	NA	coding protein	psRNATarget