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BaseInfo

ncRNA ID	novel_csa_miR11
Species	Camelina sativa
Class	miRNA
Genome position	Chr9:29474670-29474803 [-]
Reference genome	Cs
Source	SRR1736515
Length	22
Mature sequence(if miRNA)	1 - UCCAUCUGGAUCAGUACAUCUU - 22
Stem-loop(if miRNA)	--   -    U     AG       C      U      CA     C       -   ---C   G CC   GAU UGCU AUUCA  UGGAGAU GAUUUG GCCAUA  GACAU GAUAAAC AGC    CUU A  G   ||| |||| |||||  ||||||| |||||| ||||||  ||||| ||||||| |||    ||| |  A   CUA AUGA UAGGU  ACCUUUA CUAAAC CGGUAU  CUGUG CUAUUUG UCG    GAA U  G UU   C    C     CU       A      U      AC     U       A   UAAA   G UU
Stem-loop sequence	GAUUGCUUAUUCAAGUGGAGAUCGAUUUGUGCCAUACAGACAUCGAUAAACAGCCCUUGACCGAGUUUGAAGAAAUGCUAGUUUAUCUGUGUCCAUAUGGCUCAAAUCAAUUUCCAUCUGGAUCAGUACAUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010470480.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |=|||||||||||||||||||| targets:1160   AGGAUGUACUGAUCCAGAUGGA   1181 Target Full Sequence	0.0	PREDICTED: Camelina sativa uncharacterized LOC104748901 (LOC104748901), mRNA	NA	coding protein	psRNATarget
XM_010432371.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |=||||||||*||||||||||| targets:71   AGGAUGUACUUAUCCAGAUGGA   92 Target Full Sequence	1.5	PREDICTED: Camelina sativa uncharacterized LOC104714902 (LOC104714902), mRNA	NA	coding protein	psRNATarget
XM_010432416.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |=|||||||||||||||||*|| targets:677   AGGAUGUACUGAUCCAGAUAGA   698 Target Full Sequence	1.5	PREDICTED: Camelina sativa uncharacterized LOC104714952 (LOC104714952), mRNA	NA	coding protein	psRNATarget
XM_010482577.1	ncRNA:22   UUC-UACAUGACUAGGUCUACCU   1   |||-||||||||||||||||||| targets:2191   AAGUAUGUACUGAUCCAGAUGGA   2213 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104759673 (LOC104759673), mRNA	NA	coding protein	psRNATarget
XM_010498093.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |=||*||=|||||||||||||| targets:1469   AGGACGUGCUGAUCCAGAUGGA   1490 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104773477 (LOC104773477), mRNA	NA	coding protein	psRNATarget
XM_010433039.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |=||*||=|||||||||||||| targets:2141   AGGACGUGCUGAUCCAGAUGGA   2162 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104715647 (LOC104715647), mRNA	NA	coding protein	psRNATarget
XM_010426027.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |=||*||*|||||||||||||| targets:1262   AGGACGUUCUGAUCCAGAUGGA   1283 Target Full Sequence	2.0	PREDICTED: Camelina sativa uncharacterized LOC104709406 (LOC104709406), mRNA	NA	coding protein	psRNATarget
XM_010425952.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |||||||=||*||||||||||| targets:221   AAGAUGUGCUAAUCCAGAUGGA   242 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC104709313 (LOC104709313), mRNA	NA	coding protein	psRNATarget
XM_010453217.1	ncRNA:22   UUCUACAUGACUAGGUCUACCU   1   |=||*|||||*||||||||||| targets:1865   AGGACGUACUAAUCCAGAUGGA   1886 Target Full Sequence	2.5	PREDICTED: Camelina sativa uncharacterized LOC104733653 (LOC104733653), mRNA	NA	coding protein	psRNATarget