Search result

BaseInfo

ncRNA ID	novel_csa_miR10
Species	Camelina sativa
Class	miRNA
Genome position	Chr9:29475336-29475518 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - UUUGGAUUGAAGGGAGCUCUA - 21
Stem-loop(if miRNA)	--         GA        C      -U    ------       AGA      G  A  C    G UC     -    CU       AUAAUG   GAGCUCCUU  AGUUCAAA GAGAGU  AAGU      AGGGUAA   AAAGCU CU AG UAUG A  CCAUA AGCC  AAUCCUU      A   |||||||||  |||||||| ||||||  ||||      |||||||   |||||| || || |||| |  ||||| ||||  |||||||   CUCGAGGGA  UUAGGUUU UUCUCA  UUCG      UCCCGUU   UUUCGA GA UC AUAC U  GGUAU UUGG  UUAGGAA      U AU         AG        C      UU    UUAAUU       CAA      G  C  U    G UC     A    -U       AAAACA
Stem-loop sequence	GAGCUCCUUGAAGUUCAAACGAGAGUUAAGUAGGGUAAAGAAAAGCUGCUAAGCUAUGGAUCCCAUAAGCCCUAAUCCUUAUAAUGAUACAAAAAAGGAUUUGGUUAUAUGGCUUGCAUAUCUCAGGAGCUUUAACUUGCCCUUUAAUUGCUUUUACUCUUCUUUGGAUUGAAGGGAGCUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019245807.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |||||||=|||||||*||||| targets:714   UAGAGCUUCCUUCAAACCAAA   734 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104786339), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010415689.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |||||||=|||||||*||||| targets:672   UAGAGCUUCCUUCAAACCAAA   692 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104700212), mRNA	NA	coding protein	psRNATarget
XM_010511711.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |||||||=|||||||*||||| targets:1144   UAGAGCUUCCUUCAAACCAAA   1164 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104786339), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GAFB01044580.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=||||||||||||=|||||= targets:319   GGGAGCUCCCUUCAGUCCAAG   339 Target Full Sequence	2.5	TSA: Camelina sativa Locus_18636_Transcript_1/1_Confidence_1.000_Length_807 mRNA sequence	NA	coding protein	psRNATarget
XM_010466545.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1189   UGGAGCUCCCUUCAUUCCAAU   1209 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104745344), mRNA	NA	coding protein	psRNATarget
XM_010497488.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1211   UGGAGCUCCCUUCAUUCCAAU   1231 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104772907), mRNA	NA	coding protein	psRNATarget
XM_010492854.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1150   UGGAGCUCCCUUCAUUCCAAU   1170 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104768802), mRNA	NA	coding protein	psRNATarget
XM_010425084.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1239   UGGAGCUCCCUUCAUUCCAAU   1259 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010454221.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1221   UGGAGCUCCCUUCAUUCCAAU   1241 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010425085.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1283   UGGAGCUCCCUUCAUUCCAAU   1303 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010454222.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1288   UGGAGCUCCCUUCAUUCCAAU   1308 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010471103.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:659   UAGAGCCCCCUUCAAACCAAA   679 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein SPEAR2-like (LOC104749460), mRNA	NA	coding protein	psRNATarget
XM_010511499.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:655   UAGAGCCCCCUUCAAACCAAA   675 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein SPEAR2 (LOC104786160), mRNA	NA	coding protein	psRNATarget
XM_010415482.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:689   UAGAGCCCCCUUCAAACCAAA   709 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein SPEAR2-like (LOC104700037), mRNA	NA	coding protein	psRNATarget
XM_019245513.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   **||||||||||||*|||||* targets:860   ACGAGCUCCCUUCAUUCCAAU   880 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104787043), mRNA	NA	coding protein	psRNATarget
XM_010474781.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   **||||||||||||*|||||* targets:857   ACGAGCUCCCUUCAUUCCAAU   877 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104752592), mRNA	NA	coding protein	psRNATarget
XM_019228039.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   **||||||||||||*|||||* targets:936   ACGAGCUCCCUUCAUUCCAAU   956 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104703509), mRNA	NA	coding protein	psRNATarget