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BaseInfo

ncRNA ID	novel_csa_miR7
Species	Camelina sativa
Class	miRNA
Genome position	Chr9:34696351-34696456 [+]
Reference genome	Cs
Source	SRR1736515
Length	22
Mature sequence(if miRNA)	1 - UCAACUCGUUCAAGCACCAGCU - 22
Stem-loop(if miRNA)	--      C     A     AG     A        A  AC   --    -UA G   UCAACU GUUCA GCACC  CUCGA GAAGCGUA CU  UUU  AUCU   A A   |||||| ||||| |||||  ||||| |||||||| ||  |||  ||||   |   AGUUGA CGAGU CGUGG  GAGCU CUUCGCAU GA  AAG  UAGG   U A GU      A     G     AA     -        C  AA   UC    UAC A
Stem-loop sequence	UCAACUCGUUCAAGCACCAGCUCGAAGAAGCGUAACUACUUUAUCUUAAGAAAUCAUGGAUCUGAAAAAGCUACGCUUCUCGAGAAGGUGCGUGAGCAAGUUGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GAFB01018433.1	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   |||||||||||||||||||*|| targets:203   AGCUGGUGCUUGAACGAGUAGA   224 Target Full Sequence	1.5	TSA: Camelina sativa Locus_4964_Transcript_1/1_Confidence_1.000_Length_363 mRNA sequence	NA	coding protein	psRNATarget
XM_010447518.1	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   |**|||||=||||||||||||= targets:253   AUAUGGUGUUUGAACGAGUUGG   274 Target Full Sequence	2.0	PREDICTED: Camelina sativa protein PHLOEM PROTEIN 2-LIKE A5-like (LOC104728560), mRNA	NA	coding protein	psRNATarget
XM_010486512.1	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   |**|||||=||||||||||||= targets:253   AUAUGGUGUUUGAACGAGUUGG   274 Target Full Sequence	2.0	PREDICTED: Camelina sativa protein PHLOEM PROTEIN 2-LIKE A6-like (LOC104763097), mRNA	NA	coding protein	psRNATarget
XM_010442170.2	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   ||||||||||||=||||||||* targets:298   AGCUGGUGCUUGGACGAGUUGU   319 Target Full Sequence	2.5	PREDICTED: Camelina sativa disease resistance protein RML1A-like (LOC104723769), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010442168.2	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   ||||||||||||=||||||||* targets:298   AGCUGGUGCUUGGACGAGUUGU   319 Target Full Sequence	2.5	PREDICTED: Camelina sativa disease resistance protein RML1A-like (LOC104723769), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010442166.2	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   ||||||||||||=||||||||* targets:298   AGCUGGUGCUUGGACGAGUUGU   319 Target Full Sequence	2.5	PREDICTED: Camelina sativa disease resistance protein RML1A-like (LOC104723769), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019228773.1	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   |*=|||||||||=||||||||= targets:292   ACUUGGUGCUUGGACGAGUUGG   313 Target Full Sequence	2.5	PREDICTED: Camelina sativa vesicle-associated protein 1-4-like (LOC104707436), mRNA	NA	coding protein	psRNATarget
XM_010436714.1	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   |**|||||||||=||||||||= targets:388   ACAUGGUGCUUGGACGAGUUGG   409 Target Full Sequence	2.5	PREDICTED: Camelina sativa protein PHLOEM PROTEIN 2-LIKE A5-like (LOC104718893), mRNA	NA	coding protein	psRNATarget
XM_010516205.2	ncRNA:22   UCGACCACGAACUUGCUCAACU   1   ***||||||*|||||||||||= targets:420   UCAUGGUGCAUGAACGAGUUGG   441 Target Full Sequence	2.5	PREDICTED: Camelina sativa probable disease resistance protein RPP1 (LOC104790448), mRNA	NA	coding protein	psRNATarget