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BaseInfo

ncRNA ID ath-miR414
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:25137456-25137563 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 64 - UCAUCUUCAUCAUCAUCGUCA - 84
Stem-loop(if miRNA) UCA   UUA   UC   A        ---A     A  -   A  G    - AUCAUC
   UCA   UCA  AUC UCAUAUUC    UCUUC UC AUC UC UCAU C      A
   |||   |||  ||| ||||||||    ||||| || ||| || |||| |      U
   AGU   AGU  UAG AGUAUGAG    AGAAG AG UAG AG AGUA G      C
-AG   -UG   -U   -        AGUG     -  A   A  -    U CUACUA
Stem-loop sequence UCAUCAUUAUCAUCAUCAUCAUAUUCAUCUUCAUCAUCAUCGUCAUCAUCAUCAUCAUCAUCGUAUGAGAAGAUAGAGAAGAGUGAGAGUAUGAGAUUUGAGUUGAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_116701.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||||||
targets:455   UGACGAUGAUGAUGAAGAUGA   475

0.0 Arabidopsis thaliana senescence regulator (Protein of unknown function, DUF584) mRNA senescence regulator (Protein of unknown function, DUF584)(AT4G04630) coding protein psRNATarget
AK118597.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||||||
targets:327   UGACGAUGAUGAUGAAGAUGA   347

0.0 Arabidopsis thaliana At4g04630 mRNA for unknown protein, complete cds, clone: RAFL19-84-H21 NA coding protein psRNATarget
AY084825.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||||||
targets:455   UGACGAUGAUGAUGAAGAUGA   475

0.0 Arabidopsis thaliana clone 118778 mRNA, complete sequence NA coding protein psRNATarget
BT003696.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||||||
targets:324   UGACGAUGAUGAUGAAGAUGA   344

0.0 Arabidopsis thaliana At4g04630 mRNA, complete cds NA coding protein psRNATarget
NM_122398.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||||||||
targets:844   AGACGAUGAUGAUGAAGAUGA   864

0.0 Arabidopsis thaliana stress response NST1-like protein mRNA stress response NST1-like protein(AT5G24890) coding protein psRNATarget
AY088175.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||||||||
targets:748   AGACGAUGAUGAUGAAGAUGA   768

0.0 Arabidopsis thaliana clone 42528 mRNA, complete sequence NA coding protein psRNATarget
NM_128884.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||||||||
targets:388   AGACGAUGAUGAUGAAGAUGA   408

0.0 Arabidopsis thaliana transmembrane protein mRNA transmembrane protein(AT2G33250) coding protein psRNATarget
AY045597.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||||||||
targets:325   AGACGAUGAUGAUGAAGAUGA   345

0.0 Arabidopsis thaliana F25I18.1/F25I18.1 mRNA, complete cds NA coding protein psRNATarget
AY097386.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||||||||
targets:303   AGACGAUGAUGAUGAAGAUGA   323

0.0 Arabidopsis thaliana At2g33250/F25I18.1 mRNA, complete cds NA coding protein psRNATarget
BT020475.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||||||||
targets:576   AGACGAUGAUGAUGAAGAUGA   596

0.0 Arabidopsis thaliana At5g24890 gene, complete cds NA coding protein psRNATarget
BT023742.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||||||||
targets:528   AGACGAUGAUGAUGAAGAUGA   548

0.0 Arabidopsis thaliana At5g24890 gene, complete cds NA coding protein psRNATarget
NM_100565.5
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:323   UGAUGAUGAUGAUGAAGAUGA   343

1.0 Arabidopsis thaliana Insulinase (Peptidase family M16) family protein mRNA Insulinase (Peptidase family M16) family protein(AT1G06900) coding protein psRNATarget
AK229304.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:324   UGAUGAUGAUGAUGAAGAUGA   344

1.0 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL16-57-E14 NA coding protein psRNATarget
NM_116780.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:447   UGAUGAUGAUGAUGAAGAUGA   467

1.0 Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein (YAO), mRNA Transducin/WD40 repeat-like superfamily protein(YAO) coding protein psRNATarget
AY099817.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:439   UGAUGAUGAUGAUGAAGAUGA   459

1.0 Arabidopsis thaliana U3 snoRNP-associated-like protein (At4g05410) mRNA, complete cds NA coding protein psRNATarget
NM_001337310.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:1049   UGAUGAUGAUGAUGAAGAUGA   1069

1.0 Arabidopsis thaliana WRKY DNA-binding protein 58 (WRKY58), mRNA WRKY DNA-binding protein 58(WRKY58) coding protein psRNATarget
BT000325.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:333   UGAUGAUGAUGAUGAAGAUGA   353

1.0 Arabidopsis thaliana U3 snoRNP-associated-like protein (At4g05410) mRNA, complete cds NA coding protein psRNATarget
BX826450.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:415   UGAUGAUGAUGAUGAAGAUGA   435

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001337311.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:965   UGAUGAUGAUGAUGAAGAUGA   985

1.0 Arabidopsis thaliana WRKY DNA-binding protein 58 (WRKY58), mRNA WRKY DNA-binding protein 58(WRKY58) coding protein psRNATarget
NM_110973.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:783   UGAUGAUGAUGAUGAAGAUGA   803

1.0 Arabidopsis thaliana WRKY DNA-binding protein 58 (WRKY58), partial mRNA WRKY DNA-binding protein 58(WRKY58) coding protein psRNATarget
NM_001345395.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:977   UGAUGAUGAUGAUGAAGAUGA   997

1.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
NM_001345394.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:901   UGAUGAUGAUGAUGAAGAUGA   921

1.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
AF426254.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:783   UGAUGAUGAUGAUGAAGAUGA   803

1.0 Arabidopsis thaliana WRKY transcription factor 58 (WRKY58) mRNA, complete cds NA coding protein psRNATarget
NM_125406.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:618   UGAUGAUGAUGAUGAAGAUGA   638

1.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein partial mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
NM_001203648.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:601   UGAUGAUGAUGAUGAAGAUGA   621

1.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein partial mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
DQ056730.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:549   UGAUGAUGAUGAUGAAGAUGA   569

1.0 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds NA coding protein psRNATarget
NM_001345396.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||||||
targets:709   UGAUGAUGAUGAUGAAGAUGA   729

1.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
NM_115191.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||||||||
targets:826   AGAUGAUGAUGAUGAAGAUGA   846

1.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein mRNA AP2/B3-like transcriptional factor family protein(AT3G53310) coding protein psRNATarget
NM_123527.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||||||||
targets:1320   CGAUGAUGAUGAUGAAGAUGA   1340

1.0 Arabidopsis thaliana F-box/RNI-like superfamily protein partial mRNA F-box/RNI-like superfamily protein(AT5G41630) coding protein psRNATarget
BX822775.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||||||||
targets:639   AGAUGAUGAUGAUGAAGAUGA   659

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY087586.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||||||||
targets:458   AGAUGAUGAUGAUGAAGAUGA   478

1.0 Arabidopsis thaliana clone 36830 mRNA, complete sequence NA coding protein psRNATarget
BX823050.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||||||||
targets:448   AGAUGAUGAUGAUGAAGAUGA   468

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZD01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT025724.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||||||||
targets:408   AGAUGAUGAUGAUGAAGAUGA   428

1.0 Arabidopsis thaliana At3g53310 mRNA, complete cds NA coding protein psRNATarget
AB493647.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||||||||
targets:408   AGAUGAUGAUGAUGAAGAUGA   428

1.0 Arabidopsis thaliana At3g53310 mRNA for hypothetical protein, partial cds, clone: RAAt3g53310 NA coding protein psRNATarget
NM_001344118.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||*||||||||||||||||
targets:1137   UGACUAUGAUGAUGAAGAUGA   1157

1.0 Arabidopsis thaliana Protein with RNI-like/FBD-like domain partial mRNA Protein with RNI-like/FBD-like domain(AT5G35926) coding protein psRNATarget
NM_001344117.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||*||||||||||||||||
targets:1053   UGACUAUGAUGAUGAAGAUGA   1073

1.0 Arabidopsis thaliana Protein with RNI-like/FBD-like domain partial mRNA Protein with RNI-like/FBD-like domain(AT5G35926) coding protein psRNATarget
NM_112881.5
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:743   UGAGGAUGAUGAUGAAGAUGA   763

1.0 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT3G19910) coding protein psRNATarget
BX824923.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:589   UGAGGAUGAUGAUGAAGAUGA   609

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH83ZA05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX823600.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:536   UGAGGAUGAUGAUGAAGAUGA   556

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS55ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX823999.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:624   UGAGGAUGAUGAUGAAGAUGA   644

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH13ZA06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY045590.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:582   UGAGGAUGAUGAUGAAGAUGA   602

1.0 Arabidopsis thaliana AT3g19910/MPN9_15 mRNA, complete cds NA coding protein psRNATarget
AY045984.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:540   UGAGGAUGAUGAUGAAGAUGA   560

1.0 Arabidopsis thaliana unknown protein (At3g19910) mRNA, complete cds NA coding protein psRNATarget
BX822444.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:624   UGAGGAUGAUGAUGAAGAUGA   644

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB38ZG06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX823795.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:565   UGAGGAUGAUGAUGAAGAUGA   585

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS76ZD09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY084453.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:541   UGAGGAUGAUGAUGAAGAUGA   561

1.0 Arabidopsis thaliana clone 108568 mRNA, complete sequence NA coding protein psRNATarget
BX822276.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:558   UGAGGAUGAUGAUGAAGAUGA   578

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB25ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX825062.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:448   UGAGGAUGAUGAUGAAGAUGA   468

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH92ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001338426.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:667   UGAGGAUGAUGAUGAAGAUGA   687

1.0 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT3G19910) coding protein psRNATarget
AY079353.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||||||||
targets:435   UGAGGAUGAUGAUGAAGAUGA   455

1.0 Arabidopsis thaliana unknown protein (At3g19910) mRNA, complete cds NA coding protein psRNATarget
NM_119460.5
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||=|||||||||
targets:941   UGACGAUGAUGGUGAAGAUGA   961

1.5 Arabidopsis thaliana Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein mRNA Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein(AT4G33060) coding protein psRNATarget
AK227277.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||=|||||||||
targets:964   UGACGAUGAUGGUGAAGAUGA   984

1.5 Arabidopsis thaliana mRNA for cyclophilin, complete cds, clone: RAFL11-10-D24 NA coding protein psRNATarget
BX827440.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||=|||||||||
targets:951   UGACGAUGAUGGUGAAGAUGA   971

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS54ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX827876.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||=|||||||||
targets:883   UGACGAUGAUGGUGAAGAUGA   903

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX829317.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||=|||||||||
targets:892   UGACGAUGAUGGUGAAGAUGA   912

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZB06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY568525.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||=|||||||||
targets:861   UGACGAUGAUGGUGAAGAUGA   881

1.5 Arabidopsis thaliana multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase (CYP57) mRNA, complete cds NA coding protein psRNATarget
BT025329.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||=|||||||||
targets:861   UGACGAUGAUGGUGAAGAUGA   881

1.5 Arabidopsis thaliana At4g33060 mRNA, complete cds NA coding protein psRNATarget
NM_001125588.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:1151   GGACGAUGAUGAUGAGGAUGA   1171

1.5 Arabidopsis thaliana nucleosome assembly protein1;1 (NAP1;1), mRNA nucleosome assembly protein1;1(NAP1;1) coding protein psRNATarget
NM_118744.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:1128   GGACGAUGAUGAUGAGGAUGA   1148

1.5 Arabidopsis thaliana nucleosome assembly protein1;1 (NAP1;1), mRNA nucleosome assembly protein1;1(NAP1;1) coding protein psRNATarget
AY054484.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:1045   GGACGAUGAUGAUGAGGAUGA   1065

1.5 Arabidopsis thaliana nucleosome assembly protein I-like protein (At4g26110; F20B18.220) mRNA, complete cds NA coding protein psRNATarget
U12858.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:1015   GGACGAUGAUGAUGAGGAUGA   1035

1.5 Arabidopsis thaliana Col-0 nucleosome assembly protein I-like protein mRNA, partial cds NA coding protein psRNATarget
AY093283.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:984   GGACGAUGAUGAUGAGGAUGA   1004

1.5 Arabidopsis thaliana nucleosome assembly protein I-like protein (At4g26110) mRNA, complete cds NA coding protein psRNATarget
NM_103693.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:670   CGACGAUGAUGAUGAGGAUGA   690

1.5 Arabidopsis thaliana nucleolin mRNA nucleolin(AT1G47970) coding protein psRNATarget
NM_105132.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:870   UGACGAUGAUGAUGAUGAUGA   890

1.5 Arabidopsis thaliana Homeodomain-like superfamily protein (DUO3), partial mRNA Homeodomain-like superfamily protein(DUO3) coding protein psRNATarget
FJ461625.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:615   UGACGAUGAUGAUGAUGAUGA   635

1.5 Arabidopsis thaliana DUO pollen 3 (DUO3) mRNA, complete cds NA coding protein psRNATarget
NM_001343746.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:2479   UGACGAUGAUGAUGAUGAUGA   2499

1.5 Arabidopsis thaliana MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (emb1211), mRNA MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein(emb1211) coding protein psRNATarget
BT000731.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:389   CGACGAUGAUGAUGAGGAUGA   409

1.5 Arabidopsis thaliana clone RAFL08-11-G02 (R11308) unknown protein (At1g47970) mRNA, complete cds NA coding protein psRNATarget
NM_122170.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:2216   UGACGAUGAUGAUGAUGAUGA   2236

1.5 Arabidopsis thaliana MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (emb1211), mRNA MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein(emb1211) coding protein psRNATarget
NM_001333536.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:686   UGACGAUGAUGAUGAUGAUGA   706

1.5 Arabidopsis thaliana kinesin-like protein mRNA kinesin-like protein(AT1G52320) coding protein psRNATarget
AY094427.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:2140   UGACGAUGAUGAUGAUGAUGA   2160

1.5 Arabidopsis thaliana AT5g22640/MDJ22_6 mRNA, complete cds NA coding protein psRNATarget
AF386997.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:384   CGACGAUGAUGAUGAGGAUGA   404

1.5 Arabidopsis thaliana Unknown protein (T2J15.12) mRNA, complete cds NA coding protein psRNATarget
BX818414.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:371   CGACGAUGAUGAUGAGGAUGA   391

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL78ZA04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_127874.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:743   UGACGAUGAUGAUGAUGAUGA   763

1.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT2G23100) coding protein psRNATarget
AK228528.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:552   UGACGAUGAUGAUGAUGAUGA   572

1.5 Arabidopsis thaliana mRNA for putative bZIP protein, complete cds, clone: RAFL15-21-I12 NA coding protein psRNATarget
NM_179465.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:552   UGACGAUGAUGAUGAUGAUGA   572

1.5 Arabidopsis thaliana kinesin-like protein mRNA kinesin-like protein(AT1G52320) coding protein psRNATarget
NM_001203438.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:1794   UGACGAUGAUGAUGAUGAUGA   1814

1.5 Arabidopsis thaliana MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (emb1211), mRNA MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein(emb1211) coding protein psRNATarget
AY128296.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||*|||||||||||
targets:780   UGACGAUGAGGAUGAAGAUGA   800

1.5 Arabidopsis thaliana AT5g52640/F6N7_13 mRNA, complete cds NA coding protein psRNATarget
M62984.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||*|||||||||||
targets:741   UGACGAUGAGGAUGAAGAUGA   761

1.5 A.thaliana heat shock protein 83 mRNA, complete cds NA coding protein psRNATarget
NM_001333535.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:442   UGACGAUGAUGAUGAUGAUGA   462

1.5 Arabidopsis thaliana kinesin-like protein partial mRNA kinesin-like protein(AT1G52320) coding protein psRNATarget
NM_121023.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:450   UGACGAUGAUGAUGAUGAUGA   470

1.5 Arabidopsis thaliana nuclear matrix protein-like protein (THO1), mRNA nuclear matrix protein-like protein(THO1) coding protein psRNATarget
NM_120580.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||||||||||||||*||
targets:1087   UGACGAUGAUGAUGAAGACGA   1107

1.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
NM_001203340.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:466   UGACGAUGAUGAUGAUGAUGA   486

1.5 Arabidopsis thaliana nuclear matrix protein-like protein (THO1), mRNA nuclear matrix protein-like protein(THO1) coding protein psRNATarget
AF424566.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:370   UGACGAUGAUGAUGAUGAUGA   390

1.5 Arabidopsis thaliana AT5g09860/MYH9_7 mRNA, complete cds NA coding protein psRNATarget
NM_001085060.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||||||||||||||*||
targets:972   UGACGAUGAUGAUGAAGACGA   992

1.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
BT001091.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||*|||||||||||
targets:672   UGACGAUGAGGAUGAAGAUGA   692

1.5 Arabidopsis thaliana At5g52640/F6N7_13 mRNA, complete cds NA coding protein psRNATarget
NM_124642.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||*|||||||||||
targets:657   UGACGAUGAGGAUGAAGAUGA   677

1.5 Arabidopsis thaliana heat shock-like protein (HSP90.1), partial mRNA heat shock-like protein(HSP90.1) coding protein psRNATarget
NM_112352.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:1388   UGACGAUGAUGAUGAUGAUGA   1408

1.5 Arabidopsis thaliana hypothetical protein (EMB3120), mRNA hypothetical protein(EMB3120) coding protein psRNATarget
BT006569.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||||||||||||||=|||||
targets:318   CGACGAUGAUGAUGAGGAUGA   338

1.5 Arabidopsis thaliana At1g47970 gene, complete cds NA coding protein psRNATarget
BX842303.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:359   UGACGAUGAUGAUGAUGAUGA   379

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZC09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK227180.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:1337   UGACGAUGAUGAUGAUGAUGA   1357

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-89-L14 NA coding protein psRNATarget
NM_001342799.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||||||||||||||*||
targets:800   UGACGAUGAUGAUGAAGACGA   820

1.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
BT000829.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:213   UGACGAUGAUGAUGAUGAUGA   233

1.5 Arabidopsis thaliana unknown protein (At5g09860/MYH9_7) mRNA, complete cds NA coding protein psRNATarget
NM_121518.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:449   UGACGAUGAUGAUGAUGAUGA   469

1.5 Arabidopsis thaliana Galactose mutarotase-like superfamily protein mRNA Galactose mutarotase-like superfamily protein(AT5G15140) coding protein psRNATarget
NM_127587.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:1306   UGACGAUGAUGAUGAUGAUGA   1326

1.5 Arabidopsis thaliana Zinc finger C-x8-C-x5-C-x3-H type family protein mRNA Zinc finger C-x8-C-x5-C-x3-H type family protein(AT2G20280) coding protein psRNATarget
NM_001342800.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||||||||||||||*||
targets:561   UGACGAUGAUGAUGAAGACGA   581

1.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
NM_111947.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:997   UGACGAUGAUGAUGAUGAUGA   1017

1.5 Arabidopsis thaliana sequence-specific DNA binding transcription factor mRNA sequence-specific DNA binding transcription factor(AT3G11100) coding protein psRNATarget
AK118690.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:414   UGACGAUGAUGAUGAUGAUGA   434

1.5 Arabidopsis thaliana At5g15140 mRNA for putative aldose 1-epimerase, complete cds, clone: RAFL19-95-L15 NA coding protein psRNATarget
DQ446952.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:414   UGACGAUGAUGAUGAUGAUGA   434

1.5 Arabidopsis thaliana clone pENTR221-At5g15140 aldose 1-epimerase family protein (At5g15140) mRNA, complete cds NA coding protein psRNATarget
NM_127714.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:1200   UGACGAUGAUGAUGACGAUGA   1220

1.5 Arabidopsis thaliana IBR domain containing protein partial mRNA IBR domain containing protein(AT2G21420) coding protein psRNATarget
DQ446542.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:1200   UGACGAUGAUGAUGACGAUGA   1220

1.5 Arabidopsis thaliana clone pENTR221-At2g21420 zinc finger protein-like protein (At2g21420) mRNA, complete cds NA coding protein psRNATarget
NM_122249.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||*|||
targets:862   UGACGAUGAUGAUGAAGUUGA   882

1.5 Arabidopsis thaliana high-mobility group box 6 (HMGB6), mRNA high-mobility group box 6(HMGB6) coding protein psRNATarget
DQ446540.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:999   UGACGAUGAUGAUGAUGAUGA   1019

1.5 Arabidopsis thaliana clone pENTR221-At2g21420 zinc finger protein-like protein (At2g21420) mRNA, complete cds NA coding protein psRNATarget
AY085073.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:501   UGACGAUGAUGAUGAUGAUGA   521

1.5 Arabidopsis thaliana clone 126401 mRNA, complete sequence NA coding protein psRNATarget
AY064137.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:468   UGACGAUGAUGAUGAUGAUGA   488

1.5 Arabidopsis thaliana AT3g11100/F11B9_105 mRNA, complete cds NA coding protein psRNATarget
AY086023.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||*|||
targets:665   UGACGAUGAUGAUGAAGUUGA   685

1.5 Arabidopsis thaliana clone 207075 mRNA, complete sequence NA coding protein psRNATarget
NM_001339186.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:861   UGACGAUGAUGAUGAUGAUGA   881

1.5 Arabidopsis thaliana Ribosomal L18p/L5e family protein partial mRNA Ribosomal L18p/L5e family protein(AT3G45020) coding protein psRNATarget
AK118688.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||*|||
targets:680   UGACGAUGAUGAUGAAGUUGA   700

1.5 Arabidopsis thaliana At5g23420 mRNA for unknown protein, complete cds, clone: RAFL19-95-K07 NA coding protein psRNATarget
AK220623.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||*|||||||||||
targets:780   UGACGAUGAGGAUGAAGAUGA   800

1.5 Arabidopsis thaliana mRNA for heat-shock protein, partial cds, clone: RAFL21-33-H07 NA coding protein psRNATarget
NM_114371.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:534   UGACGAUGAUGAUGAUGAUGA   554

1.5 Arabidopsis thaliana Ribosomal L18p/L5e family protein mRNA Ribosomal L18p/L5e family protein(AT3G45020) coding protein psRNATarget
AK221615.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:424   UGACGAUGAUGAUGAUGAUGA   444

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-92-G17 NA coding protein psRNATarget
NM_001203442.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||||*|||
targets:380   UGACGAUGAUGAUGAAGUUGA   400

1.5 Arabidopsis thaliana high-mobility group box 6 (HMGB6), mRNA high-mobility group box 6(HMGB6) coding protein psRNATarget
BX842188.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:403   UGACGAUGAUGAUGAUGAUGA   423

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL35ZH03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX825586.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:416   UGACGAUGAUGAUGAUGAUGA   436

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL46ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT014764.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:401   UGACGAUGAUGAUGAUGAUGA   421

1.5 Arabidopsis thaliana At3g45020 gene, complete cds NA coding protein psRNATarget
NM_001339187.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:512   UGACGAUGAUGAUGAUGAUGA   532

1.5 Arabidopsis thaliana Ribosomal L18p/L5e family protein partial mRNA Ribosomal L18p/L5e family protein(AT3G45020) coding protein psRNATarget
NM_001339188.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:509   UGACGAUGAUGAUGAUGAUGA   529

1.5 Arabidopsis thaliana Ribosomal L18p/L5e family protein partial mRNA Ribosomal L18p/L5e family protein(AT3G45020) coding protein psRNATarget
BT014850.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||||||||||||||*|||||
targets:345   UGACGAUGAUGAUGAUGAUGA   365

1.5 Arabidopsis thaliana At3g45020 gene, complete cds NA coding protein psRNATarget
NM_125139.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=||||||||||||||||=
targets:2181   UGAUGAUGAUGAUGAAGAUGG   2201

2.0 Arabidopsis thaliana Calmodulin-binding protein mRNA Calmodulin-binding protein(AT5G57580) coding protein psRNATarget
AY056289.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=||||||||||||||||=
targets:2129   UGAUGAUGAUGAUGAAGAUGG   2149

2.0 Arabidopsis thaliana putative calmodulin-binding protein (At5g57580) mRNA, complete cds NA coding protein psRNATarget
NM_113217.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=||||||||||||||||=
targets:1398   UGAUGAUGAUGAUGAAGAUGG   1418

2.0 Arabidopsis thaliana plant/protein (DUF668) mRNA plant/protein (DUF668)(AT3G23160) coding protein psRNATarget
AK226680.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=||||||||||||||||=
targets:1343   UGAUGAUGAUGAUGAAGAUGG   1363

2.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-53-J09 NA coding protein psRNATarget
AY091434.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=||||||||||||||||=
targets:1917   UGAUGAUGAUGAUGAAGAUGG   1937

2.0 Arabidopsis thaliana putative calmodulin-binding protein (At5g57580) mRNA, complete cds NA coding protein psRNATarget
NM_128016.6
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||==|||||||||||||||||
targets:1150   UGGUGAUGAUGAUGAAGAUGA   1170

2.0 Arabidopsis thaliana major centromere autoantigen B-like protein mRNA major centromere autoantigen B-like protein(AT2G24550) coding protein psRNATarget
AF411794.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||==|||||||||||||||||
targets:885   UGGUGAUGAUGAUGAAGAUGA   905

2.0 Arabidopsis thaliana At2g24550/F25P17.15 mRNA, complete cds NA coding protein psRNATarget
AY099874.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||==|||||||||||||||||
targets:885   UGGUGAUGAUGAUGAAGAUGA   905

2.0 Arabidopsis thaliana unknown protein (At2g24550) mRNA, complete cds NA coding protein psRNATarget
BX820697.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||==|||||||||||||||||
targets:867   UGGUGAUGAUGAUGAAGAUGA   887

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT000317.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||==|||||||||||||||||
targets:714   UGGUGAUGAUGAUGAAGAUGA   734

2.0 Arabidopsis thaliana unknown protein (At2g24550) mRNA, complete cds NA coding protein psRNATarget
NM_001343000.1
ncRNA:21   ACU-GCUACUACUACUUCUACU   1
  |||-||||||||||||||||||
targets:2248   UGAGCGAUGAUGAUGAAGAUGA   2269

2.0 Arabidopsis thaliana SWIB/MDM2 and Plus-3 and GYF domain-containing protein mRNA SWIB/MDM2 and Plus-3 and GYF domain-containing protein(AT5G08430) coding protein psRNATarget
NM_120928.3
ncRNA:21   ACU-GCUACUACUACUUCUACU   1
  |||-||||||||||||||||||
targets:2061   UGAGCGAUGAUGAUGAAGAUGA   2082

2.0 Arabidopsis thaliana SWIB/MDM2 and Plus-3 and GYF domain-containing protein mRNA SWIB/MDM2 and Plus-3 and GYF domain-containing protein(AT5G08430) coding protein psRNATarget
AY069913.1
ncRNA:21   ACU-GCUACUACUACUUCUACU   1
  |||-||||||||||||||||||
targets:2154   UGAGCGAUGAUGAUGAAGAUGA   2175

2.0 Arabidopsis thaliana AT5g08430/F8L15_160 mRNA sequence NA coding protein psRNATarget
BX830551.1
ncRNA:21   ACU-GCUACUACUACUUCUACU   1
  |||-||||||||||||||||||
targets:1714   UGAGCGAUGAUGAUGAAGAUGA   1735

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZD01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT033094.1
ncRNA:21   ACU-GCUACUACUACUUCUACU   1
  |||-||||||||||||||||||
targets:1400   UGAGCGAUGAUGAUGAAGAUGA   1421

2.0 Arabidopsis thaliana unknown protein (At5g08430) mRNA, complete cds NA coding protein psRNATarget
NM_114228.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=||||||||||||||||*
targets:4744   UGAUGAUGAUGAUGAAGAUGC   4764

2.0 Arabidopsis thaliana aldehyde oxidase 2 (AAO2), mRNA aldehyde oxidase 2(AAO2) coding protein psRNATarget
NM_100565.5
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||*|||||||||||
targets:374   UGAGGAUGAGGAUGAAGAUGA   394

2.5 Arabidopsis thaliana Insulinase (Peptidase family M16) family protein mRNA Insulinase (Peptidase family M16) family protein(AT1G06900) coding protein psRNATarget
AK229304.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||*|||||||||||
targets:375   UGAGGAUGAGGAUGAAGAUGA   395

2.5 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL16-57-E14 NA coding protein psRNATarget
NM_001332211.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:2259   UGAUGAUGAUGAUGAGGAUGA   2279

2.5 Arabidopsis thaliana wall associated kinase-like 4 (WAKL4), mRNA wall associated kinase-like 4(WAKL4) coding protein psRNATarget
NM_001332211.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |*|=|||||||||||*|||||
targets:2238   UAAUGAUGAUGAUGAUGAUGA   2258

2.5 Arabidopsis thaliana wall associated kinase-like 4 (WAKL4), mRNA wall associated kinase-like 4(WAKL4) coding protein psRNATarget
NM_113806.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||||=|||
targets:1595   UGAUGAUGAUGAUGAAGGUGA   1615

2.5 Arabidopsis thaliana Glutaredoxin family protein mRNA Glutaredoxin family protein(AT3G28850) coding protein psRNATarget
NM_114773.5
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:927   UGAUGAUGAUGAUGAGGAUGA   947

2.5 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT3G49140) coding protein psRNATarget
AY086135.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:372   UGAUGAUGAUGAUGAGGAUGA   392

2.5 Arabidopsis thaliana clone 21721 mRNA, complete sequence NA coding protein psRNATarget
AK229783.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:803   UGAUGAUGAUGAUGAGGAUGA   823

2.5 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL21-73-B14 NA coding protein psRNATarget
NM_120009.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:1470   UGAUGAUGAUGAUGAGGAUGA   1490

2.5 Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein mRNA Transducin/WD40 repeat-like superfamily protein(AT4G38480) coding protein psRNATarget
NM_001342500.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:1416   UGAUGAUGAUGAUGAGGAUGA   1436

2.5 Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein mRNA Transducin/WD40 repeat-like superfamily protein(AT4G38480) coding protein psRNATarget
AY084990.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:1400   UGAUGAUGAUGAUGAGGAUGA   1420

2.5 Arabidopsis thaliana clone 123721 mRNA, complete sequence NA coding protein psRNATarget
NM_123336.6
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:962   UGAUGAUGAUGAUGAGGAUGA   982

2.5 Arabidopsis thaliana ribosomal protein L5 B (RPL5B), mRNA ribosomal protein L5 B(RPL5B) coding protein psRNATarget
NM_001203510.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:987   UGAUGAUGAUGAUGAGGAUGA   1007

2.5 Arabidopsis thaliana ribosomal protein L5 B (RPL5B), mRNA ribosomal protein L5 B(RPL5B) coding protein psRNATarget
AY079020.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:918   UGAUGAUGAUGAUGAGGAUGA   938

2.5 Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, complete cds NA coding protein psRNATarget
AY093123.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:906   UGAUGAUGAUGAUGAGGAUGA   926

2.5 Arabidopsis thaliana ribosomal protein L5 - like (At5g39740) mRNA, complete cds NA coding protein psRNATarget
BX832617.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:903   UGAUGAUGAUGAUGAGGAUGA   923

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX831866.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:895   UGAUGAUGAUGAUGAGGAUGA   915

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT008706.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||=|||||
targets:876   UGAUGAUGAUGAUGAGGAUGA   896

2.5 Arabidopsis thaliana At5g39740 gene, complete cds NA coding protein psRNATarget
NM_001343746.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||=|||||
targets:2440   AGAUGAUGAUGAUGAGGAUGA   2460

2.5 Arabidopsis thaliana MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (emb1211), mRNA MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein(emb1211) coding protein psRNATarget
NM_122170.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||=|||||
targets:2177   AGAUGAUGAUGAUGAGGAUGA   2197

2.5 Arabidopsis thaliana MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (emb1211), mRNA MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein(emb1211) coding protein psRNATarget
NM_103877.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||*|||||
targets:1923   UGAUGAUGAUGAUGAUGAUGA   1943

2.5 Arabidopsis thaliana C2H2 type zinc finger transcription factor family partial mRNA C2H2 type zinc finger transcription factor family(AT1G49900) coding protein psRNATarget
AY094427.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||=|||||
targets:2101   AGAUGAUGAUGAUGAGGAUGA   2121

2.5 Arabidopsis thaliana AT5g22640/MDJ22_6 mRNA, complete cds NA coding protein psRNATarget
NM_127874.4
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||*|||||||||||*|||||
targets:704   UGAAGAUGAUGAUGAUGAUGA   724

2.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT2G23100) coding protein psRNATarget
NM_001203438.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  *||=|||||||||||=|||||
targets:1755   AGAUGAUGAUGAUGAGGAUGA   1775

2.5 Arabidopsis thaliana MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (emb1211), mRNA MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein(emb1211) coding protein psRNATarget
NM_120580.3
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||*||*|||||||||||
targets:1066   UGACGAAGAAGAUGAAGAUGA   1086

2.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
NM_001085060.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||*||*|||||||||||
targets:951   UGACGAAGAAGAUGAAGAUGA   971

2.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
NM_001342799.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||*||*|||||||||||
targets:779   UGACGAAGAAGAUGAAGAUGA   799

2.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
NM_001342800.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  ||||||*||*|||||||||||
targets:540   UGACGAAGAAGAUGAAGAUGA   560

2.5 Arabidopsis thaliana DNAse I-like superfamily protein mRNA DNAse I-like superfamily protein(AT5G04980) coding protein psRNATarget
NM_127714.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||*|||||
targets:1173   UGAUGAUGAUGAUGAUGAUGA   1193

2.5 Arabidopsis thaliana IBR domain containing protein partial mRNA IBR domain containing protein(AT2G21420) coding protein psRNATarget
DQ446542.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||*|||||
targets:1173   UGAUGAUGAUGAUGAUGAUGA   1193

2.5 Arabidopsis thaliana clone pENTR221-At2g21420 zinc finger protein-like protein (At2g21420) mRNA, complete cds NA coding protein psRNATarget
AF030304.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|||||||||||*|||||
targets:68   UGAUGAUGAUGAUGAUGAUGA   88

2.5 Arabidopsis thaliana zinc finger protein mRNA, partial cds NA coding protein psRNATarget
NM_001345395.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|*||||||||||||||*
targets:878   UGAUGCUGAUGAUGAAGAUGU   898

3.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
NM_001345394.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|*||||||||||||||*
targets:802   UGAUGCUGAUGAUGAAGAUGU   822

3.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
NM_125406.2
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|*||||||||||||||*
targets:519   UGAUGCUGAUGAUGAAGAUGU   539

3.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein partial mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
NM_001203648.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|*||||||||||||||*
targets:580   UGAUGCUGAUGAUGAAGAUGC   600

3.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein partial mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
DQ056730.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|*||||||||||||||*
targets:450   UGAUGCUGAUGAUGAAGAUGU   470

3.0 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds NA coding protein psRNATarget
NM_001345396.1
ncRNA:21   ACUGCUACUACUACUUCUACU   1
  |||=|*||||||||||||||*
targets:610   UGAUGCUGAUGAUGAAGAUGU   630

3.0 Arabidopsis thaliana AP2/B3-like transcriptional factor family protein mRNA AP2/B3-like transcriptional factor family protein(AT5G60130) coding protein psRNATarget
NM_124075.4
ncRNA:21   ACUG---CUACUACUACUUCUACU   1
  ||||---|||||||||||||||||
targets:973   UGACAACGAUGAUGAUGAAGAUGA   996

3.0 Arabidopsis thaliana lon protease 2 (LON2), mRNA lon protease 2(LON2) coding protein psRNATarget
NM_111395.4
ncRNA:21   ACU---GCUACUACUACUUCUACU   1
  |||---||||||||||||||||||
targets:1085   UGAGUUCGAUGAUGAUGAAGAUGA   1108

3.0 Arabidopsis thaliana Heavy metal transport/detoxification superfamily protein mRNA Heavy metal transport/detoxification superfamily protein(AT3G05220) coding protein psRNATarget
NM_202497.2
ncRNA:21   ACU---GCUACUACUACUUCUACU   1
  |||---||||||||||||||||||
targets:1043   UGAGUUCGAUGAUGAUGAAGAUGA   1066

3.0 Arabidopsis thaliana Heavy metal transport/detoxification superfamily protein mRNA Heavy metal transport/detoxification superfamily protein(AT3G05220) coding protein psRNATarget
AK226941.1
ncRNA:21   ACU---GCUACUACUACUUCUACU   1
  |||---||||||||||||||||||
targets:821   UGAGUUCGAUGAUGAUGAAGAUGA   844

3.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-28-D12 NA coding protein psRNATarget

Reference

1 PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets";
Wang XJ, Reyes JL, Chua NH, Gaasterland T;
Genome Biol. 5:R65(2004).
2 PMID:16669754
"MicroRNAS and their regulatory roles in plants";
Jones-Rhoades MW, Bartel DP, Bartel B;
Annu Rev Plant Biol. 57:19-53(2006).
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