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BaseInfo

ncRNA ID novel_cmo_miR171
Species Cucurbita moschata
Class miRNA
Genome position Cmo_Chr15:9751843-9752024 [+]
Reference genome Cmoschata_v1
Source SRR1632267
Length 24
Mature sequence(if miRNA) 1 - CCAAUCGAUGUGGGAUCUCACGAU - 24
Stem-loop(if miRNA) --                           U                   C CUC C      U --G   -----        AAUUGAUGU  G
  CCAAUCGAUGUGGGAUCUCACGAUCUA CCCCCUUCGGGGUCCAGUG C   G UGGCAC C   CUC     CAUUCUCC         GG A
  ||||||||||||||||||||||||||| ||||||||||||||||||| |   | |||||| |   |||     ||||||||         ||
  GGUUGGUUACACCCUAGAGUGUUAGGU GGGGGAAGCCCCGGGUUGC G   C ACCGUG G   GAG     GUGGGAGG         CC C
GG                           -                   A AAA A      U ACA   CACAA        AAGGAUAGU  C
Stem-loop sequence CCAAUCGAUGUGGGAUCUCACGAUCUAUCCCCCUUCGGGGUCCAGUGCCCUCGCUGGCACUCGCUCCAUUCUCCAAUUGAUGUGGGACCCCUGAUAGGAAGGAGGGUGAACACGAGACAGUGUGCCAACAAAGACGUUGGGCCCCGAAGGGGGUGGAUUGUGAGAUCCCACAUUGGUUGGGG