ncRNA ID | novel_cmo_miR165 |
Species | Cucurbita moschata |
Class | miRNA |
Genome position | Cmo_Chr12:7553966-7554110 [+] |
Reference genome | Cmoschata_v1 |
Source | SRR1632267 |
Length | 23 |
Mature sequence(if miRNA) | 1 - AUGACUAUGUGAUGUAUGGACUG - 23 |
Stem-loop(if miRNA) |
--AUG        -  G     AC       ACU  UGA         -     --A       --U  UG  GU      ACUAUGUG AU UAUGG  UGUGUUG   GC   UUGUUUAUG CUAUG   AACGUAA   GG  AU  U      |||||||| || |||||  |||||||   ||   ||||||||| |||||   |||||||   ||  ||  G      UGAUGCAC UA GUACU  AUAUAAU   UG   AAUAAGUAU GAUGU   UUGUAUU   CU  UG  A UAUUA        A  G     GU       GAU  UAG         U     GUA       UGU  GU  UC |
Stem-loop sequence | AUGACUAUGUGAUGUAUGGACUGUGUUGACUGCUGAUUGUUUAUGCUAUGAAACGUAAUGGUGAUGUUGACUGUUGUCUGUUUAUGUUAUGUGUAGUUAUGAAUAAGAUGUUAGUAAUAUAUGUCAUGGAUACACGUAGUAUUAU |