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BaseInfo

ncRNA ID	ath-miRf10829-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CUCGACCAUGGGGUCGAGUG - NA
Stem-loop(if miRNA)	AUGG          -    GUGAA     -AA   CUU          A AUACUCGACC    GGUCGAGUGG UGGU     GUGAU   GGC   CUACUCGACC G ||||||||||    |||||||||| ||||     |||||   |||   |||||||||| UGUGAGCUGG    CCAGCUCAUC ACCG     CGCUA   UUG   GGUGAGCUGG G           GGUA          U    --AGG     AAA   UUU          A
Stem-loop sequence	AUACUCGACCAUGGGGUCGAGUGGUGGUGUGAAGUGAUAAGGCCUUCUACUCGACCAGGAGGUCGAGUGGUUUGUUAAAAUCGCGGAGCCAUCUACUCGACCAUGGGGUCGAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY231407.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||||||||||| targets:536   CACUCGACCCCAUGGUCGAG   555 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||=|||||||| targets:490   CACUCGACCCCGUGGUCGAG   509 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||=|||||||| targets:1210   CACUCGACCCCGUGGUCGAG   1229 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
DQ069808.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||*|||||||| targets:91   CACUCGACCCCCUGGUCGAG   110 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||*|||||||| targets:231   CACUCGACCCCCUGGUCGAG   250 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   =||||||||||*|||||||| targets:182   UACUCGACCCCCUGGUCGAG   201 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||*|||||||| targets:231   CACUCGACCCCCUGGUCGAG   250 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   =||||||||||*|||||||| targets:182   UACUCGACCCCCUGGUCGAG   201 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||*|||||||| targets:125   CACUCGACCCCCUGGUCGAG   144 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||*|||||||| targets:500   CACUCGACCCCCUGGUCGAG   519 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||*|||||||| targets:500   CACUCGACCCCCUGGUCGAG   519 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||||||||*|||||||| targets:1572   CACUCGACCCCCUGGUCGAG   1591 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   =||||||||||*|||||||| targets:309   UACUCGACCCCCUGGUCGAG   328 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   =||*|||||||*|||||||| targets:584   UACYCGACCCCCUGGUCGAG   603 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   |||||*|||*|||||||||| targets:340   CACUCUACCACAUGGUCGAG   359 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   =||||*|||||*|||||||| targets:302   UACUCAACCCCCUGGUCGAG   321 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   =||||*|||||*|||||||| targets:302   UACUCAACCCCCUGGUCGAG   321 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   *||||*|||*|||||||||| targets:705   AACUCUACCACAUGGUCGAG   724 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GUGAGCUGGGGUACCAGCUC   1   *||||*|||*|||||||||| targets:1080   AACUCUACCACAUGGUCGAG   1099 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget