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BaseInfo

ncRNA ID novel_cmo_miR153
Species Cucurbita moschata
Class miRNA
Genome position Cmo_Chr11:13789475-13789678 [+]
Reference genome Cmoschata_v1
Source SRR1632267
Length 24
Mature sequence(if miRNA) 181 - AGCGGUGGAUCUGGGGCGUUACAA - 204
Stem-loop(if miRNA) --      A    AGC         GCA                           A      U        AA                   G        U
  GUAACG CCCA   CCACCGUUA   GAUAUUGUCCUCUUUGGGCUUUUCCUU UGGGCU CCCCUCAA  CUUUAAAACGCGUCUGUUA GGGAAGGU U
  |||||| ||||   |||||||||   ||||||||||||||||||||||||||| |||||| ||||||||  ||||||||||||||||||| ||||||||
  CAUUGC GGGU   GGUGGCGAU   CUAUAACAGGAGAAACUCGAAAGGGAA GCCCGA GGGGAGUU  GAAAUUUUGCGCAGACGAU CCCUUCCA C
AA      G    CUA         AGA                           A      U        CC                   A        C
Stem-loop sequence GUAACGACCCAAGCCCACCGUUAGCAGAUAUUGUCCUCUUUGGGCUUUUCCUUAUGGGCUUCCCCUCAAAACUUUAAAACGCGUCUGUUAGGGGAAGGUUUCCACCUUCCCAUAGCAGACGCGUUUUAAAGCCUUGAGGGGUAGCCCGAAAGGGAAAGCUCAAAGAGGACAAUAUCAGAUAGCGGUGGAUCUGGGGCGUUACAA