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BaseInfo

ncRNA ID ath-miR157b-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:24921086-24921217 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 90 - GCUCUCUAGCCUUCUGUCAUC - 110
Stem-loop(if miRNA) U   ---A    -U    -A   U         -A             U  -      A   UUCCUC
 GGG    GGCA  UGAU  GUG UGACAGAAG  UAGAGAGCACAGA GA UAAGAU CAA      G
 |||    ||||  ||||  ||| |||||||||  ||||||||||||| || |||||| |||      C
 CCC    CCGU  AUUG  CAC ACUGUCUUC  AUCUCUCGUGUUU CU AUUCUA GUU      A
A   ACUA    UU    CC   U         CG             C  C      C   UCUUCG
Stem-loop sequence UGGGAGGCAUUGAUAGUGUUGACAGAAGAUAGAGAGCACAGAUGAUAAGAUACAAUUCCUCGCAGCUUCUUUGCAUCUUACUCCUUUGUGCUCUCUAGCCUUCUGUCAUCACCCGUUAUUUGCCAUCACCCA

Reference

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"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:12202040
"Prediction of plant microRNA targets";
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
Cell. 110:513-520(2002).
3 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
5 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
6 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).