ncRNA ID | novel_cmo_miR49 |
Species | Cucurbita moschata |
Class | miRNA |
Genome position | Cmo_Chr18:296756-296922 [+] |
Reference genome | Cmoschata_v1 |
Source | SRR1632266 |
Length | 21 |
Mature sequence(if miRNA) | 147 - UUUGGAUUGAAGGGAGCUCUA - 167 |
Stem-loop(if miRNA) |
--         GA       UA      UA    ----A      CU     G    AC    G UC      CC    UUUGAU       GAGCUCCUU  AGUCCAA  GAGGGU  UGGC     GGGUGA  GAGCU CUGA  UAUG A  CCACAG  CCUA      UGAGC   |||||||||  |||||||  ||||||  ||||     ||||||  ||||| ||||  |||| |  ||||||  ||||      ||||U   CUCGAGGGA  UUAGGUU  UUCCCA  AUUG     UCCGCU  UUCGA GACU  AUAC U  GGUGUC  GGAU      ACUCG AU         AG       UG      -C    GUUUG      AC     G    CU    G UC      -C    ------     |
Stem-loop sequence | GAGCUCCUUGAAGUCCAAUAGAGGGUUAUGGCAGGGUGACUGAGCUGCUGAACUAUGGAUCCCACAGCCCCUAUUUGAUUGAGCUGCUCAUAGGCCUGUGGCUUGCAUAUCUCAGGAGCUUCAUCGCCUGUUUGGUUACACCCUUGUUUGGAUUGAAGGGAGCUCUA |