ncRNA ID | novel_cmo_miR33 |
Species | Cucurbita moschata |
Class | miRNA |
Genome position | Cmo_Chr16:3003047-3003164 [+] |
Reference genome | Cmoschata_v1 |
Source | SRR1632266;SRR1632267 |
Length | 22 |
Mature sequence(if miRNA) | 1 - AUGGGAGGCGGUGAGAUUCAAU - 22 |
Stem-loop(if miRNA) |
--AU      CGG            A -  G   AC       UC  AA  U      CA     GGGAGG   UGAGAUUCAAUU G CU CUG  UCAUUCA  CA  UA UGAGUU  A     ||||||   |||||||||||| | || |||  |||||||  ||  || ||||||     CCUUCC   AUUCUAAGUUAG C GA GAC  AGUAAGU  GU  AU ACUCGG  A CUUU      -AA            A A  G   GC       GA  AA  U      UA |
Stem-loop sequence | AUGGGAGGCGGUGAGAUUCAAUUAGCUGCUGACUCAUUCAUCCAAAUAUUGAGUUCAAAAUGGCUCAUUAAAUGAGUGAAUGACGCAGGAGACAGAUUGAAUCUUAAACCUUCCUUUC |