Search result

BaseInfo

ncRNA ID novel_bra_miR1018
Species Brassica rapa
Class miRNA
Genome position ChrA10:1976673-1976840 [-]
Reference genome Brapa_1.0
Source SRR1485284
Length 24
Mature sequence(if miRNA) 145 - AAAUGUUCCAAUGUAUGACUCUAU - 168
Stem-loop(if miRNA) --                 A                        --U   AAAA            AAA    CU   U  A    C
  AAAUGUUCCAAUGUAUG CUCUAUAAUAGAGUUCCUCUAUUU   AGA    AAAAUAUAGAGG   GUUA  UUU CC UCUA A
  ||||||||||||||||| ||||||||||||||||||||||||   |||    ||||||||||||   ||||  ||| || ||||
  UUUACGAGGUUACAUAC GAGAUAUUAUCUCAAGGAGAUAAA   UCU    UUUUAUAUCUCU   CGAU  AAG GG AGAU U
UU                 G                        UAU   ---C            AUA    AU   U  -    U
Stem-loop sequence AAAUGUUCCAAUGUAUGACUCUAUAAUAGAGUUCCUCUAUUUUAGAAAAAAAAAUAUAGAGGAAAGUUACUUUUUCCAUCUACAUUUAGAGGUGAAUAUAGCAUAUCUCUAUAUUUUCUCUUAUAAAUAGAGGAACUCUAUUAUAGAGGCAUACAUUGGAGCAUUUUU