Search result

BaseInfo

ncRNA ID novel_bra_miR1010
Species Brassica rapa
Class miRNA
Genome position ChrA9:4446458-4446657 [+]
Reference genome Brapa_1.0
Source SRR1160826
Length 25
Mature sequence(if miRNA) 176 - UCAGAACCAAACACAGAACAAGAAC - 200
Stem-loop(if miRNA) --          -     A             AG     C          AU      C                 U   AA       --       UUG
  UCUUGUUCUG GUUUG UUUUGAACAGCUU  UGUUG UCUGUAAUGG  GCAUAA CAGUAGAUAUGUCAGGA AUU  AAGGAAC  CGUUAUU   C
  |||||||||| ||||| |||||||||||||  ||||| ||||||||||  |||||| ||||||||||||||||| |||  |||||||  |||||||   C
  AGAACAAGAC CAAAC AAGACUUGUCGAA  ACGAC AGACAUUACC  CGUAUU GUCAUCUAUACAGUCUU UAA  UUCCUUG  GCGAUAG   U
CA          A     C             CA     A          AC      C                 C   GC       UA       UGC
Stem-loop sequence UCUUGUUCUGGUUUGAUUUUGAACAGCUUAGUGUUGCUCUGUAAUGGAUGCAUAACCAGUAGAUAUGUCAGGAUAUUAAAAGGAACCGUUAUUUUGCCUCGUGAUAGCGAUGUUCCUUCGAAUCUUCUGACAUAUCUACUGCUUAUGCCACCAUUACAGAACAGCAACAAGCUGUUCAGAACCAAACACAGAACAAGAAC