ncRNA ID | novel_bra_miR1010 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:4446458-4446657 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1160826 |
Length | 25 |
Mature sequence(if miRNA) | 176 - UCAGAACCAAACACAGAACAAGAAC - 200 |
Stem-loop(if miRNA) |
--          -     A             AG     C          AU      C                 U   AA       --       UUG   UCUUGUUCUG GUUUG UUUUGAACAGCUU  UGUUG UCUGUAAUGG  GCAUAA CAGUAGAUAUGUCAGGA AUU  AAGGAAC  CGUUAUU   C   |||||||||| ||||| |||||||||||||  ||||| ||||||||||  |||||| ||||||||||||||||| |||  |||||||  |||||||   C   AGAACAAGAC CAAAC AAGACUUGUCGAA  ACGAC AGACAUUACC  CGUAUU GUCAUCUAUACAGUCUU UAA  UUCCUUG  GCGAUAG   U CA          A     C             CA     A          AC      C                 C   GC       UA       UGC |
Stem-loop sequence | UCUUGUUCUGGUUUGAUUUUGAACAGCUUAGUGUUGCUCUGUAAUGGAUGCAUAACCAGUAGAUAUGUCAGGAUAUUAAAAGGAACCGUUAUUUUGCCUCGUGAUAGCGAUGUUCCUUCGAAUCUUCUGACAUAUCUACUGCUUAUGCCACCAUUACAGAACAGCAACAAGCUGUUCAGAACCAAACACAGAACAAGAAC |