| ncRNA ID | novel_bra_miR1005 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA2:11709127-11709345 [-] |
| Reference genome | Brapa_1.0 |
| Source | SRR1485283 |
| Length | 23 |
| Mature sequence(if miRNA) | 197 - GAAGAUCCCACAUCGGAAAUAUG - 219 |
| Stem-loop(if miRNA) |
-- C A G A GA AUC GAAGAUCC AC UCGGAAAUAUGAAAGGGA UUGA UAAUAUAUAA GACUUGGGUCAAUCCACUAAUUGUCAAUUGGUUUUAAGUUGGAAGCCCAAGAAACUU A |||||||| || |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| CUUCUAGG UG AGCCUUUAUACUUUCCCU AACU AUUAUAUAUU CUGAACCCGGUUAGGUGAUUAACGGUUAACCAAAAUUCAACCUUCGGGUUCUUUGAA U CU - C G C GC CAG |
| Stem-loop sequence | GAAGAUCCCACAUCGGAAAUAUGAAAGGGAGUUGAAUAAUAUAUAAGAGACUUGGGUCAAUCCACUAAUUGUCAAUUGGUUUUAAGUUGGAAGCCCAAGAAACUUAUCAUGACAAGUUUCUUGGGCUUCCAACUUAAAACCAAUUGGCAAUUAGUGGAUUGGCCCAAGUCCGUUAUAUAUUACUCAAGUCCCUUUCAUAUUUCCGACGUGGAUCUUCUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009148254.1 |
|
2.0 | PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g16740-like (LOC103870144), mRNA | F-box/kelch-repeat protein At3g16740-like(LOC103870144) | coding protein | psRNATarget | |||||||||
| XM_009130805.2 |
|
2.5 | PREDICTED: Brassica rapa LAG1 longevity assurance homolog 1 (LOC103853908), mRNA | LAG1 longevity assurance homolog 1(LOC103853908) | coding protein | psRNATarget |