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BaseInfo

ncRNA ID novel_bra_miR1004
Species Brassica rapa
Class miRNA
Genome position ChrA10:1976676-1976837 [-]
Reference genome Brapa_1.0
Source SRR1485283
Length 24
Mature sequence(if miRNA) 139 - UGUUCCAAUGUAUGACUCUAUAAU - 162
Stem-loop(if miRNA) --              A                        --U   AAAA            AAA    CU   U  A    C
  UGUUCCAAUGUAUG CUCUAUAAUAGAGUUCCUCUAUUU   AGA    AAAAUAUAGAGG   GUUA  UUU CC UCUA A
  |||||||||||||| ||||||||||||||||||||||||   |||    ||||||||||||   ||||  ||| || ||||
  ACGAGGUUACAUAC GAGAUAUUAUCUCAAGGAGAUAAA   UCU    UUUUAUAUCUCU   CGAU  AAG GG AGAU U
UU              G                        UAU   ---C            AUA    AU   U  -    U
Stem-loop sequence UGUUCCAAUGUAUGACUCUAUAAUAGAGUUCCUCUAUUUUAGAAAAAAAAAUAUAGAGGAAAGUUACUUUUUCCAUCUACAUUUAGAGGUGAAUAUAGCAUAUCUCUAUAUUUUCUCUUAUAAAUAGAGGAACUCUAUUAUAGAGGCAUACAUUGGAGCAUU