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BaseInfo

ncRNA ID	novel_bra_miR1001
Species	Brassica rapa
Class	miRNA
Genome position	ChrA1:23565212-23565350 [+]
Reference genome	Brapa_1.0
Source	SRR1485283
Length	21
Mature sequence(if miRNA)	1 - UAUGAAAAGUGGUACUAUGAA - 21
Stem-loop(if miRNA)	--U                    U      UU     C      C    -U   -AA      U    UAU    AUGAAAAGUGGUACUAUGAA GUGGUA  UGUGG AAUUUC CUUU  GAA   AUAUAA AUAU   A    |||||||||||||||||||| ||||||  ||||| |||||| ||||  |||   |||||| ||||    UACUUUUCACCAUGGUACUU CACCAU  GUACU UUAAAG GAAA  CUU   UGUGUU UAUA   U UUC                    U      UU     -      A    UU   AUA      U    UUU
Stem-loop sequence	UAUGAAAAGUGGUACUAUGAAUGUGGUAUUUGUGGCAAUUUCCCUUUUGAAAAAUAUAAUAUAUUAUAUUUUAUAUUUUGUGUAUAUUCUUAAAGAGAAAUUUCAUGUUUACCACUUUCAUGGUACCACUUUUCAUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009152348.1	ncRNA:21   AAGUAUCAUGGUGAAAAGUAU   1   |||||=||||||||||||||* targets:948   UUCAUGGUACCACUUUUCAUU   968 Target Full Sequence	2.0	PREDICTED: Brassica rapa ethylene-responsive transcription factor ERF057-like (LOC103873940), mRNA	ethylene-responsive transcription factor ERF057-like(LOC103873940)	coding protein	psRNATarget
XM_009123261.2	ncRNA:21   AAGUAUCAUGGUGAAAAGUAU   1   **|||*||||||||||*|||| targets:797   GCCAUUGUACCACUUUACAUA   817 Target Full Sequence	2.5	PREDICTED: Brassica rapa plastidic glucose transporter 4 (LOC103846351), transcript variant X1, mRNA	plastidic glucose transporter 4(LOC103846351)	coding protein	psRNATarget
XM_009123262.2	ncRNA:21   AAGUAUCAUGGUGAAAAGUAU   1   **|||*||||||||||*|||| targets:712   GCCAUUGUACCACUUUACAUA   732 Target Full Sequence	2.5	PREDICTED: Brassica rapa plastidic glucose transporter 4 (LOC103846351), transcript variant X2, mRNA	plastidic glucose transporter 4(LOC103846351)	coding protein	psRNATarget
XM_018659116.1	ncRNA:21   AAGUAUCAUGGUGAAAAGUAU   1   ||||||**||||||||||||* targets:2490   UUCAUACGACCACUUUUCAUU   2510 Target Full Sequence	3.0	PREDICTED: Brassica rapa pre-mRNA-processing-splicing factor 8A-like (LOC103867076), mRNA	NA	coding protein	psRNATarget
XM_009147647.2	ncRNA:21   AAGUAUCAUGGUGAAAAGUAU   1   **|=|=|*||||||||||||| targets:2216   GACGUGGAACCACUUUUCAUA   2236 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103869564 (LOC103869564), mRNA	uncharacterized LOC103869564(LOC103869564)	coding protein	psRNATarget