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BaseInfo

ncRNA ID	novel_bra_miR994
Species	Brassica rapa
Class	miRNA
Genome position	ChrA4:3688339-3688399 [+]
Reference genome	Brapa_1.0
Source	SRR1485282
Length	24
Mature sequence(if miRNA)	38 - UGACGUGGACAGCUUCUCUGAUGC - 61
Stem-loop(if miRNA)	GUCG         -C   -  A UG  UGAU     UAGAGAAGC  UCC UG U  GC    U     |||||||||  ||| || |  ||     GUCUCUUCG  AGG GC A  CG    U CGUA         AC   U  - GU  UUAA
Stem-loop sequence	GUCGUAGAGAAGCCUCCUGAUUGGCUGAUUUAAUUGCUGACGUGGACAGCUUCUCUGAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009142141.2	ncRNA:24   CGUAGUCUCUUCGACAGGUGCAGU   1   *||*|||||||||||||||||||= targets:35   UCAACAGAGAAGCUGUCCACGUCG   58 Target Full Sequence	1.0	PREDICTED: Brassica rapa tetraketide alpha-pyrone reductase 2-like (LOC103864387), mRNA	tetraketide alpha-pyrone reductase 2-like(LOC103864387)	coding protein	psRNATarget
XM_009141896.2	ncRNA:24   CGUAGUCUCUUCGACAGGUGCAGU   1   *||*|||||||||||||||||||= targets:27   UCAACAGAGAAGCUGUCCACGUCG   50 Target Full Sequence	1.0	PREDICTED: Brassica rapa tetraketide alpha-pyrone reductase 2-like (LOC103864137), mRNA	tetraketide alpha-pyrone reductase 2-like(LOC103864137)	coding protein	psRNATarget
XM_009139487.2	ncRNA:24   CGUAGUCUCUUCGACAGGUGCAGU   1   *||*|||||||||||||||||||= targets:35   UCAACAGAGAAGCUGUCCACGUCG   58 Target Full Sequence	1.0	PREDICTED: Brassica rapa tetraketide alpha-pyrone reductase 2-like (LOC103861778), mRNA	tetraketide alpha-pyrone reductase 2-like(LOC103861778)	coding protein	psRNATarget
XM_009148679.2	ncRNA:24   CGUAGUCUCUUCGACAGGUGCAGU   1   |==|-|||*=|||||||||||||* targets:1133   GUGU-AGAUGAGCUGUCCACGUCC   1155 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103870541 (LOC103870541), mRNA	uncharacterized LOC103870541(LOC103870541)	coding protein	psRNATarget