Search result

BaseInfo

ncRNA ID	novel_bra_miR990
Species	Brassica rapa
Class	miRNA
Genome position	ChrA4:15194288-15194368 [-]
Reference genome	Brapa_1.0
Source	SRR1485281;SRR1485283;SRR1485284
Length	24
Mature sequence(if miRNA)	58 - AAAGCCAUCAGAGACUGAACUCUC - 81
Stem-loop(if miRNA)	--        ---     ACUG            AAAAGA    U   AAAGCCAU   CAGAG    AACUCUCCCUCU      UUUU U   ||||||||   |||||    ||||||||||||      |||| U   UUUCGGUA   GUUUC    UUGAGAGGGAGA      AGAG A CA        AGC     ---A            ----AG    A
Stem-loop sequence	AAAGCCAUCAGAGACUGAACUCUCCCUCUAAAAGAUUUUUUUAAGAGAGAAGAGGGAGAGUUACUUUGCGAAUGGCUUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009152536.1	ncRNA:24   CUCU--CAAGUCAGAGACUACCGAAA   1   |||=--||||||||||||||||*||| targets:442   GAGGAGGUUCAGUCUCUGAUGGAUUU   467 Target Full Sequence	1.5	PREDICTED: Brassica rapa dehydrodolichyl diphosphate synthase 6-like (LOC103874115), transcript variant X1, mRNA	dehydrodolichyl diphosphate synthase 6-like(LOC103874115)	coding protein	psRNATarget
XM_018659687.1	ncRNA:24   CUCU--CAAGUCAGAGACUACCGAAA   1   |||=--||||||||||||||||*||| targets:446   GAGGAGGUUCAGUCUCUGAUGGAUUU   471 Target Full Sequence	1.5	PREDICTED: Brassica rapa dehydrodolichyl diphosphate synthase 6-like (LOC103874115), transcript variant X2, mRNA	NA	coding protein	psRNATarget