ncRNA ID | novel_bra_miR978 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA3:27467913-27468092 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1485280 |
Length | 24 |
Mature sequence(if miRNA) | 157 - AAAUCUGAAACCCUAAACCCUUGG - 180 |
Stem-loop(if miRNA) |
--           CC                  C    C            AAU                   AUA   UC     C - U   AAAUCUGAAAC  UAAACCCUUGGGUAAACC UAAA CCUUGGAUAAAU   AAAUUCUAAAUUAAAAGCA   AAA  CUAAA C C U   |||||||||||  |||||||||||||||||| |||| ||||||||||||   |||||||||||||||||||   |||  ||||| | |   UUUAGGCUUUG  AUUUGGGAACCCAUUUGG AUUU GGAACUUAUUUA   UUUGAGAUUUAGUUUUUGU   UUU  GAUUU G G G GA           AA                  C    A            GUU                   -GA   GU     U U A |
Stem-loop sequence | AAAUCUGAAACCCUAAACCCUUGGGUAAACCCUAAACCCUUGGAUAAAUAAUAAAUUCUAAAUUAAAAGCAAUAAAAUCCUAAACCCUUGAGUGUUUUAGUGUUUAGUGUUUUUGAUUUAGAGUUUUUGAUUUAUUCAAGGAUUUACGGUUUACCCAAGGGUUUAAAGUUUCGGAUUUAG |