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BaseInfo

ncRNA ID novel_bra_miR978
Species Brassica rapa
Class miRNA
Genome position ChrA3:27467913-27468092 [-]
Reference genome Brapa_1.0
Source SRR1485280
Length 24
Mature sequence(if miRNA) 157 - AAAUCUGAAACCCUAAACCCUUGG - 180
Stem-loop(if miRNA) --           CC                  C    C            AAU                   AUA   UC     C - U
  AAAUCUGAAAC  UAAACCCUUGGGUAAACC UAAA CCUUGGAUAAAU   AAAUUCUAAAUUAAAAGCA   AAA  CUAAA C C U
  |||||||||||  |||||||||||||||||| |||| ||||||||||||   |||||||||||||||||||   |||  ||||| | |
  UUUAGGCUUUG  AUUUGGGAACCCAUUUGG AUUU GGAACUUAUUUA   UUUGAGAUUUAGUUUUUGU   UUU  GAUUU G G G
GA           AA                  C    A            GUU                   -GA   GU     U U A
Stem-loop sequence AAAUCUGAAACCCUAAACCCUUGGGUAAACCCUAAACCCUUGGAUAAAUAAUAAAUUCUAAAUUAAAAGCAAUAAAAUCCUAAACCCUUGAGUGUUUUAGUGUUUAGUGUUUUUGAUUUAGAGUUUUUGAUUUAUUCAAGGAUUUACGGUUUACCCAAGGGUUUAAAGUUUCGGAUUUAG