ncRNA ID | novel_bra_miR975 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA10:16671083-16671263 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485280 |
Length | 21 |
Mature sequence(if miRNA) | 161 - GUGAACGGACAUGGGAGGCCC - 181 |
Stem-loop(if miRNA) |
--        C            A           U  C    U A     -----U                 A   G             UU   GCCUCCUA GUCCGUUUACUC GCCUGUGGGCC CA UUCG G GACGG      CAGUGUGUUAAUUUUCC AAG CUCGAAAGUCGUG  U   |||||||| |||||||||||| ||||||||||| || |||| | |||||      ||||||||||||||||| ||| |||||||||||||  A   CGGAGGGU CAGGCAAGUGAG CGGGCACCCGG GU AAGC C CUGCC      GUCACGUAAUUAAAAGG UUC GAGCUUUCAGUAU  C CC        A            -           -  A    - G     CACCAC                 C   A             GU |
Stem-loop sequence | GCCUCCUACGUCCGUUUACUCAGCCUGUGGGCCUCACUUCGUGAGACGGUCAGUGUGUUAAUUUUCCAAAGGCUCGAAAGUCGUGUUUACUGUAUGACUUUCGAGACUUCGGAAAAUUAAUGCACUGCACCACCCGUCGCCGAAAUGGGCCCACGGGCGAGUGAACGGACAUGGGAGGCCC |