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BaseInfo

ncRNA ID novel_bra_miR975
Species Brassica rapa
Class miRNA
Genome position ChrA10:16671083-16671263 [+]
Reference genome Brapa_1.0
Source SRR1485280
Length 21
Mature sequence(if miRNA) 161 - GUGAACGGACAUGGGAGGCCC - 181
Stem-loop(if miRNA) --        C            A           U  C    U A     -----U                 A   G             UU
  GCCUCCUA GUCCGUUUACUC GCCUGUGGGCC CA UUCG G GACGG      CAGUGUGUUAAUUUUCC AAG CUCGAAAGUCGUG  U
  |||||||| |||||||||||| ||||||||||| || |||| | |||||      ||||||||||||||||| ||| |||||||||||||  A
  CGGAGGGU CAGGCAAGUGAG CGGGCACCCGG GU AAGC C CUGCC      GUCACGUAAUUAAAAGG UUC GAGCUUUCAGUAU  C
CC        A            -           -  A    - G     CACCAC                 C   A             GU
Stem-loop sequence GCCUCCUACGUCCGUUUACUCAGCCUGUGGGCCUCACUUCGUGAGACGGUCAGUGUGUUAAUUUUCCAAAGGCUCGAAAGUCGUGUUUACUGUAUGACUUUCGAGACUUCGGAAAAUUAAUGCACUGCACCACCCGUCGCCGAAAUGGGCCCACGGGCGAGUGAACGGACAUGGGAGGCCC