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BaseInfo

ncRNA ID novel_bra_miR973
Species Brassica rapa
Class miRNA
Genome position ChrA9:26636968-26637064 [-]
Reference genome Brapa_1.0
Source SRR1485280
Length 23
Mature sequence(if miRNA) 1 - AUUACUCUCAGAAUCCCACUCCA - 23
Stem-loop(if miRNA) --    UA           G       A   CAA        C    U
  GAGU  GGUUCUGAGAG AAUAUAA AAA   UUUCUUAA UUUU A
  ||||  ||||||||||| ||||||| |||   |||||||| |||| A
  CUCA  CUAAGACUCUC UUAUAUU UUU   AAAGAAUU AAAA U
AC    CC           A       C   AAC        A    U
Stem-loop sequence GAGUUAGGUUCUGAGAGGAAUAUAAAAAACAAUUUCUUAACUUUUUAAUUAAAAAUUAAGAAACAAUUUCUUAUAUUACUCUCAGAAUCCCACUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018654304.1
ncRNA:23   ACCUCACCCUAAGACUCUCAUUA   1
  ***=||*||||||||||||*|||
targets:887   GAAGGUUGGAUUCUGAGAGGAAU   909

2.5 PREDICTED: Brassica rapa uncharacterized LOC108869626 (LOC108869626), mRNA NA coding protein psRNATarget