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BaseInfo

ncRNA ID	novel_bra_miR960
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:730761-730843 [+]
Reference genome	Brapa_1.0
Source	SRR1485279
Length	21
Mature sequence(if miRNA)	63 - CAGGGGUUUAGGGUUUAGGAU - 83
Stem-loop(if miRNA)	--     U            -----              UA   U   UCUAA CCCUAAACUCUU     AAUCCUAAAUCCUU  GGG U   ||||| ||||||||||||     ||||||||||||||  |||   GGAUU GGGAUUUGGGGA     UUAGGAUUUGGGAA  CCC U UA     U            CCCAU              --   A
Stem-loop sequence	UCUAAUCCCUAAACUCUUAAUCCUAAAUCCUUUAGGGUUUACCCAAGGGUUUAGGAUUUACCCAGGGGUUUAGGGUUUAGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009144746.1	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   =|=|||||||||||||||||* targets:35   GUUCUAAACCCUAAACCCCUC   55 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103866760 (LOC103866760), transcript variant X2, mRNA	uncharacterized LOC103866760(LOC103866760)	coding protein	psRNATarget
XM_009144740.1	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   =|=|||||||||||||||||* targets:35   GUUCUAAACCCUAAACCCCUC   55 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103866760 (LOC103866760), transcript variant X1, mRNA	uncharacterized LOC103866760(LOC103866760)	coding protein	psRNATarget
XM_009128006.2	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   =*|||||||||||||||||** targets:212   GACCUAAACCCUAAACCCCAA   232 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At5g18475 (LOC103851174), mRNA	pentatricopeptide repeat-containing protein At5g18475(LOC103851174)	coding protein	psRNATarget
XM_009136013.2	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   **|||||||||||||||||** targets:279   UCCCUAAACCCUAAACCCCGA   299 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103858624 (LOC103858624), mRNA	uncharacterized LOC103858624(LOC103858624)	coding protein	psRNATarget
XM_009123750.2	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   |*|=|=||||||||||||||* targets:26   AGCUUGAACCCUAAACCCCUC   46 Target Full Sequence	3.0	PREDICTED: Brassica rapa mitochondrial inner membrane protease subunit 1-like (LOC103846754), transcript variant X4, mRNA	mitochondrial inner membrane protease subunit 1-like(LOC103846754)	coding protein	psRNATarget
XM_009123748.2	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   |*|=|=||||||||||||||* targets:25   AGCUUGAACCCUAAACCCCUC   45 Target Full Sequence	3.0	PREDICTED: Brassica rapa mitochondrial inner membrane protease subunit 1-like (LOC103846754), transcript variant X2, mRNA	mitochondrial inner membrane protease subunit 1-like(LOC103846754)	coding protein	psRNATarget
XM_009123749.2	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   |*|=|=||||||||||||||* targets:59   AGCUUGAACCCUAAACCCCUC   79 Target Full Sequence	3.0	PREDICTED: Brassica rapa mitochondrial inner membrane protease subunit 1-like (LOC103846754), transcript variant X3, mRNA	mitochondrial inner membrane protease subunit 1-like(LOC103846754)	coding protein	psRNATarget
XM_009123747.2	ncRNA:21   UAGGAUUUGGGAUUUGGGGAC   1   |*|=|=||||||||||||||* targets:58   AGCUUGAACCCUAAACCCCUC   78 Target Full Sequence	3.0	PREDICTED: Brassica rapa mitochondrial inner membrane protease subunit 1-like (LOC103846754), transcript variant X1, mRNA	mitochondrial inner membrane protease subunit 1-like(LOC103846754)	coding protein	psRNATarget
XM_009131325.2	ncRNA:19   GGAUUUGGGAUUUGGGGAC   1   ==||||||||||||||||* targets:1   UUUAAACCCUAAACCCCUU   19 Target Full Sequence	3.0	PREDICTED: Brassica rapa prohibitin-1, mitochondrial (LOC103854389), mRNA	prohibitin-1, mitochondrial(LOC103854389)	coding protein	psRNATarget