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BaseInfo

ncRNA ID novel_bra_miR956
Species Brassica rapa
Class miRNA
Genome position ChrA7:5285026-5285086 [+]
Reference genome Brapa_1.0
Source SRR1485278;SRR1485280
Length 24
Mature sequence(if miRNA) 1 - ACUAAGAAAAACUAAGAACCGUCU - 24
Stem-loop(if miRNA) --    AG               U   AAA
  ACUA  AAAAACUAAGAACCG CUA   A
  ||||  ||||||||||||||| |||   A
  UGAU  UUUUUGAUUCUUGGC GGU   U
AU    CA               U   AAA
Stem-loop sequence ACUAAGAAAAACUAAGAACCGUCUAAAAAAUAAAUGGUCGGUUCUUAGUUUUUACUAGUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009151321.2
ncRNA:24   UCUGCCAAGAAUCAAAAAGAAUCA   1
  *|*=*|||||||||||*||||||*
targets:1537   UGUUUGUUCUUAGUUUCUCUUAGG   1560

2.5 PREDICTED: Brassica rapa AT-rich interactive domain-containing protein 6 (LOC103872878), mRNA AT-rich interactive domain-containing protein 6(LOC103872878) coding protein psRNATarget