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BaseInfo

ncRNA ID novel_bra_miR951
Species Brassica rapa
Class miRNA
Genome position ChrA5:10911185-10911284 [-]
Reference genome Brapa_1.0
Source SRR1485278;SRR1485283
Length 24
Mature sequence(if miRNA) 1 - AAACCCGAUCCGGACACUGAACCG - 24
Stem-loop(if miRNA) --     -    A  U          ----U    UUC   CAGU    UGGUU
  GUUCA UGUU UG GGUCGGGUUU     CAUU   UGC    GGCA     U
  ||||| |||| || ||||||||||     ||||   |||    ||||     U
  CAAGU ACAG GC CUAGCCCAAA     GUAA   AUG    CUGU     G
GC     C    -  -          UUUUU    CUA   --AU    UAAAU
Stem-loop sequence GUUCAUGUUAUGUGGUCGGGUUUUCAUUUUCUGCCAGUGGCAUGGUUUUGUAAAUUGUCUAGUAAUCAAUGUUUUUAAACCCGAUCCGGACACUGAACCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009121393.2
ncRNA:24   GCCAAGUCACAGGCCUAGCCCAAA   1
  |||*|||*||*|||||||||||||
targets:729   CGGGUCAAUGACCGGAUCGGGUUU   752

2.0 PREDICTED: Brassica rapa chitinase 10 (LOC103844592), mRNA chitinase 10(LOC103844592) coding protein psRNATarget