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BaseInfo

ncRNA ID	novel_bra_miR943
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:14183161-14183299 [-]
Reference genome	Brapa_1.0
Source	SRR1485278
Length	23
Mature sequence(if miRNA)	117 - ACUGGAUCCGACACUUUGAAAUG - 139
Stem-loop(if miRNA)	--            A        U            AAC    C                  UUGC   UUC   ACUGGAUCCGAC CUUUGAAA GACUCGAUUUUU   CCUU UGUUUCAUGUUGUAGGCC    GUC   U   |||||||||||| |||||||| ||||||||||||   |||| ||||||||||||||||||    |||   UGACCUAGGCUG GAAAUUUU CUGGGCUGAGAA   GGAA AUAAAGUACAACAUUCGG    CGG   U UU            C        U            -CA    C                  ----   CUC
Stem-loop sequence	ACUGGAUCCGACACUUUGAAAUGACUCGAUUUUUAACCCUUCUGUUUCAUGUUGUAGGCCUUGCGUCUUCUUCUCGGCGGCUUACAACAUGAAAUACAAGGACAAGAGUCGGGUCUUUUUAAAGCGUCGGAUCCAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009125316.1	ncRNA:23   GUAAAGUUUCACAGCCUAGGUCA   1   *=*||||||||||||*||||||* targets:448   AGAUUCAAAGUGUCGCAUCCAGA   470 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103848401 (LOC103848401), mRNA	uncharacterized LOC103848401(LOC103848401)	coding protein	psRNATarget
XM_009117581.2	ncRNA:23   GUAAAGUUUCACAGCCUAGGUCA   1   =||*|*|||||||*||||||||| targets:1615   UAUCUAAAAGUGUGGGAUCCAGU   1637 Target Full Sequence	2.5	PREDICTED: Brassica rapa L-ascorbate oxidase homolog (LOC103841069), mRNA	L-ascorbate oxidase homolog(LOC103841069)	coding protein	psRNATarget
XM_009105221.2	ncRNA:23   GUAAAGUUUCACAGCCUAGGUCA   1   =||*|*|||||||*||||||||| targets:1675   UAUCUAAAAGUGUGGGAUCCAGU   1697 Target Full Sequence	2.5	PREDICTED: Brassica rapa L-ascorbate oxidase homolog (LOC103829552), mRNA	L-ascorbate oxidase homolog(LOC103829552)	coding protein	psRNATarget