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BaseInfo

ncRNA ID novel_bra_miR908
Species Brassica rapa
Class miRNA
Genome position ChrA9:31065728-31065828 [+]
Reference genome Brapa_1.0
Source SRR1485274
Length 21
Mature sequence(if miRNA) 1 - CCGAAGAGAACCCAUCCCUAG - 21
Stem-loop(if miRNA) --           C                        AU CC  A    
  CCGAAGAGAAC CAUCCCUAGCGAAAAAGAUGAUAU  G  CA UUUGC
  ||||||||||| ||||||||||||||||||||||||  |  || ||||U
  GGCUUCUCUUG GUAGGGAUUGCUUUUUCUACUAUA  C  GU AAGCG
UU           A                        AU UU  G    
Stem-loop sequence CCGAAGAGAACCCAUCCCUAGCGAAAAAGAUGAUAUAUGCCCAAUUUGCUGCGAAGUGUUCUAAUAUCAUCUUUUUCGUUAGGGAUGAGUUCUCUUCGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009141618.2
ncRNA:21   GAUCCCUACCCAAGAGAAGCC   1
  =*||*||||||||||||||*|
targets:1425   UCAGUGAUGGGUUCUCUUCAG   1445

2.5 PREDICTED: Brassica rapa uncharacterized LOC103863824 (LOC103863824), mRNA uncharacterized LOC103863824(LOC103863824) coding protein psRNATarget