ncRNA ID | novel_bra_miR908 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:31065728-31065828 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485274 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CCGAAGAGAACCCAUCCCUAG - 21 |
Stem-loop(if miRNA) |
--           C                        AU CC  A       CCGAAGAGAAC CAUCCCUAGCGAAAAAGAUGAUAU  G  CA UUUGC   ||||||||||| ||||||||||||||||||||||||  |  || ||||U   GGCUUCUCUUG GUAGGGAUUGCUUUUUCUACUAUA  C  GU AAGCG UU           A                        AU UU  G     |
Stem-loop sequence | CCGAAGAGAACCCAUCCCUAGCGAAAAAGAUGAUAUAUGCCCAAUUUGCUGCGAAGUGUUCUAAUAUCAUCUUUUUCGUUAGGGAUGAGUUCUCUUCGGUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_009141618.2 |
|
2.5 | PREDICTED: Brassica rapa uncharacterized LOC103863824 (LOC103863824), mRNA | uncharacterized LOC103863824(LOC103863824) | coding protein | psRNATarget |