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BaseInfo

ncRNA ID novel_bra_miR898
Species Brassica rapa
Class miRNA
Genome position ChrA9:10126328-10126426 [+]
Reference genome Brapa_1.0
Source SRR1485270
Length 24
Mature sequence(if miRNA) 76 - UCAUCACUCCAUUUCCCACUCCAU - 99
Stem-loop(if miRNA) --                                               
  GGAGUGGGAAAUGGAGUGAUGAACAAAAAAUAAAAGGAUUACUCUAUU
  |||||||||||||||||||||||||||||||||||||||||||||||U
  CCUCACCCUUUACCUCACUACUUGUUUUUUAUUUUCCUAAUGAGGUAU
UA                                               
Stem-loop sequence GGAGUGGGAAAUGGAGUGAUGAACAAAAAAUAAAAGGAUUACUCUAUUUUAUGGAGUAAUCCUUUUAUUUUUUGUUCAUCACUCCAUUUCCCACUCCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009132814.2
ncRNA:24   UACCUCACCCUUUACCUCACUACU   1
  *||*||||||||||||||*|||||
targets:972   UUGAAGUGGGAAAUGGAGGGAUGA   995

1.5 PREDICTED: Brassica rapa alpha-galactosidase 1 (LOC103855780), mRNA alpha-galactosidase 1(LOC103855780) coding protein psRNATarget
XM_009127480.2
ncRNA:24   UACCUCACCCUUUACCUCACUACU   1
  *||*|||*||||||||||*|||||
targets:821   UUGAAGUUGGAAAUGGAGGGAUGA   844

2.5 PREDICTED: Brassica rapa alpha-galactosidase 1 (LOC103850695), mRNA alpha-galactosidase 1(LOC103850695) coding protein psRNATarget