Search result

BaseInfo

ncRNA ID	novel_bra_miR890
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:16633013-16633188 [+]
Reference genome	Brapa_1.0
Source	SRR1485269
Length	23
Mature sequence(if miRNA)	154 - CGGAUUUAGGGUUUAGGGAUUAG - 176
Stem-loop(if miRNA)	--                                                     U         A       C       UC  AAA   AAUCCCUAAACCUUAAAUCCGAAACCCUAAACCUUUGGAUAAAUCAUAAACUC AAAUCAAAA CACUAAA ACUAAAA  CU   C   ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||  ||   C   UUAGGGAUUUGGGAUUUAGGCUUUGGGAUUUGGAAACCUAUUUAGUAUUUGAG UUUAGUUUU GUGAUUU UGAUUUU  GA   C GA                                                     -         C       A       GU  GUU
Stem-loop sequence	AAUCCCUAAACCUUAAAUCCGAAACCCUAAACCUUUGGAUAAAUCAUAAACUCUAAAUCAAAAACACUAAACACUAAAAUCCUAAACCCUUGAGUGUUUUAGUAUUUAGUGCUUUUGAUUUGAGUUUAUGAUUUAUCCAAAGGUUUAGGGUUUCGGAUUUAGGGUUUAGGGAUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009113929.1	ncRNA:23   GAUUAGGGAUUUGGGAUUUAGGC   1   |*|||*||*|||||||||||||* targets:320   CAAAUACCAAAACCCUAAAUCCA   342 Target Full Sequence	3.0	PREDICTED: Brassica rapa protein MIZU-KUSSEI 1-like (LOC103837571), mRNA	protein MIZU-KUSSEI 1-like(LOC103837571)	coding protein	psRNATarget
XM_009143358.2	ncRNA:23   GAUUAGGGAUUUGGGAUUUAGGC   1   *****||||=||||||||||||* targets:47   GCCUCCCCUGAACCCUAAAUCCA   69 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103865556 (LOC103865556), transcript variant X2, mRNA	uncharacterized LOC103865556(LOC103865556)	coding protein	psRNATarget
XM_009143357.2	ncRNA:23   GAUUAGGGAUUUGGGAUUUAGGC   1   *****||||=||||||||||||* targets:47   GCCUCCCCUGAACCCUAAAUCCA   69 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103865556 (LOC103865556), transcript variant X1, mRNA	uncharacterized LOC103865556(LOC103865556)	coding protein	psRNATarget