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BaseInfo

ncRNA ID	novel_bra_miR889
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:3831491-3831571 [+]
Reference genome	Brapa_1.0
Source	SRR1485269
Length	23
Mature sequence(if miRNA)	59 - CGAAAAUUCGUCGGAAUAUACCG - 81
Stem-loop(if miRNA)	--GA          AAC           -  UC  AUAAAA     AUAUUCCGAC   UUUUCGACGAC AU  UG      C     ||||||||||   ||||||||||| ||  ||     UAUAAGGCUG   AAAAGCUGCUG UG  GC      A GCCA          CUU           A  UU  CAAUAU
Stem-loop sequence	GAAUAUUCCGACAACUUUUCGACGACAUUCUGAUAAAACAUAUAACCGUUGUAGUCGUCGAAAAUUCGUCGGAAUAUACCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009142609.1	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   |||*||||||||||||*|||||| targets:127   CGGAAUAUUCCGACGACUUUUCG   149 Target Full Sequence	1.5	PREDICTED: Brassica rapa uncharacterized LOC103864836 (LOC103864836), mRNA	uncharacterized LOC103864836(LOC103864836)	coding protein	psRNATarget
XM_009142031.1	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   |||*||||||||||||*|||||| targets:160   CGGAAUAUUCCGACGACUUUUCG   182 Target Full Sequence	1.5	PREDICTED: Brassica rapa uncharacterized LOC103864271 (LOC103864271), mRNA	uncharacterized LOC103864271(LOC103864271)	coding protein	psRNATarget
XM_009141057.1	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:98   CGGUAUUUUCCGACGAAUUUCCG   120 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103863293 (LOC103863293), mRNA	uncharacterized LOC103863293(LOC103863293)	coding protein	psRNATarget
XM_009131783.2	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:233   CGGUAUUUUCCGACGAAUUUCCG   255 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103854820 (LOC103854820), mRNA	uncharacterized LOC103854820(LOC103854820)	coding protein	psRNATarget
XM_009125088.2	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:236   CGGUAUUUUCCGACGAAUUUCCG   258 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103848113 (LOC103848113), mRNA	uncharacterized LOC103848113(LOC103848113)	coding protein	psRNATarget
XM_018654346.1	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:78   CGGUAUUUUCCGACGAAUUUCCG   100 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC108869646 (LOC108869646), mRNA	NA	coding protein	psRNATarget
XM_009109898.1	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:225   CGGUAUUUUCCGACGAAUUUCCG   247 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103833840 (LOC103833840), mRNA	uncharacterized LOC103833840(LOC103833840)	coding protein	psRNATarget
XM_009141056.2	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:241   CGGUAUUUUCCGACGAAUUUCCG   263 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103863291 (LOC103863291), mRNA	uncharacterized LOC103863291(LOC103863291)	coding protein	psRNATarget
XM_009151075.2	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:238   CGGUAUUUUCCGACGAAUUUCCG   260 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103872645 (LOC103872645), mRNA	uncharacterized LOC103872645(LOC103872645)	coding protein	psRNATarget
XM_009134918.2	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:240   CGGUAUUUUCCGACGAAUUUCCG   262 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103857695 (LOC103857695), mRNA	uncharacterized LOC103857695(LOC103857695)	coding protein	psRNATarget
XM_009142609.1	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:270   CGGUAUUUUCCGACGAAUUUCCG   292 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103864836 (LOC103864836), mRNA	uncharacterized LOC103864836(LOC103864836)	coding protein	psRNATarget
XM_009142031.1	ncRNA:23   GCCAUAUAAGGCUGCUUAAAAGC   1   ||||||*|||||||||||||*|| targets:303   CGGUAUUUUCCGACGAAUUUCCG   325 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103864271 (LOC103864271), mRNA	uncharacterized LOC103864271(LOC103864271)	coding protein	psRNATarget