| ncRNA ID | novel_bra_miR887 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA5:9252051-9252135 [-] |
| Reference genome | Brapa_1.0 |
| Source | SRR1485269 |
| Length | 24 |
| Mature sequence(if miRNA) | 62 - UAUAGAGUGAAAUAUAGAGGAAUG - 85 |
| Stem-loop(if miRNA) |
-- A CU C CAA UAUAGAGUG AAUAUAGAGGAAUGUCA UUUU ACUC A ||||||||| ||||||||||||||||| |||| |||| AUAUCUUAC UUAUAUCUCCUUACAGU AAAA UGAG U AA C AU - AUA |
| Stem-loop sequence | UAUAGAGUGAAAUAUAGAGGAAUGUCACUUUUUCACUCCAAAUAUAGAGUAAAAUAUGACAUUCCUCUAUAUUCCAUUCUAUAAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009138123.1 |
|
2.5 | PREDICTED: Brassica rapa protein TRANSPARENT TESTA 16 (LOC103860514), transcript variant X1, mRNA | protein TRANSPARENT TESTA 16(LOC103860514) | coding protein | psRNATarget | |||||||||
| XM_009138124.1 |
|
2.5 | PREDICTED: Brassica rapa protein TRANSPARENT TESTA 16 (LOC103860514), transcript variant X2, mRNA | protein TRANSPARENT TESTA 16(LOC103860514) | coding protein | psRNATarget |