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BaseInfo

ncRNA ID	ath-miRf10798-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UUCCGCAACUUUUGGCGUUG - NA
Stem-loop(if miRNA)	--    -     UUUU  C  U     -GC    CU    AU   AUAA GUCA  UUCC GCAAC    GG GU GACGG   UCGC  GAUA  UCC    U ||||  |||| |||||    || || |||||   ||||  ||||  |||    A CAGU  AAGG CGUUG    UC UA CUGCC   AGCG  CUAU  AGG    A     CA    U     UUCU  U  U     AAA    -C    -C   CAUG
Stem-loop sequence	GUCAUUCCGCAACUUUUGGCGUUGACGGGCUCGCCUGAUAAUUCCAUAAUAAGUACGGACUAUCCGCGAAAACCGUCUAUUCUUCUUGUUGCUGGAAACUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ653141.1	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   |||||||||||||||||||| targets:103   CAACGCCAAAAGUUGCGGAA   122 Target Full Sequence	0.0	Arabidopsis thaliana clone 0000020287_0000014136 unknown mRNA	NA	coding protein	psRNATarget
DQ459190.1	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   |||||||||||||||||||| targets:103   CAACGCCAAAAGUUGCGGAA   122 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein (At3g50160) mRNA, complete cds	NA	coding protein	psRNATarget
DQ132698.1	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   |||||||||||||||||||| targets:209   CAACGCCAAAAGUUGCGGAA   228 Target Full Sequence	0.0	Arabidopsis thaliana clone 02437 hypothetical protein (At3g50160) mRNA, complete cds	NA	coding protein	psRNATarget
NM_114876.2	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   |||||||||||||||||||| targets:209   CAACGCCAAAAGUUGCGGAA   228 Target Full Sequence	0.0	Arabidopsis thaliana transmembrane protein, putative (DUF247) mRNA	transmembrane protein, putative (DUF247)(AT3G50160)	coding protein	psRNATarget
AY114689.1	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   =||||*||||||||||*||| targets:802   UAACGGCAAAAGUUGCAGAA   821 Target Full Sequence	2.5	Arabidopsis thaliana sigma-like factor (At5g13730) mRNA, complete cds	NA	coding protein	psRNATarget
AF101075.1	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   =||||*||||||||||*||| targets:878   UAACGGCAAAAGUUGCAGAA   897 Target Full Sequence	2.5	Arabidopsis thaliana sigma-like factor (SIG4) mRNA, complete cds	NA	coding protein	psRNATarget
AY059907.1	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   =||||*||||||||||*||| targets:890   UAACGGCAAAAGUUGCAGAA   909 Target Full Sequence	2.5	Arabidopsis thaliana sigma-like factor (MSH12.20) mRNA, complete cds	NA	coding protein	psRNATarget
NM_121376.4	ncRNA:20   GUUGCGGUUUUCAACGCCUU   1   =||||*||||||||||*||| targets:945   UAACGGCAAAAGUUGCAGAA   964 Target Full Sequence	2.5	Arabidopsis thaliana sigma factor 4 (SIG4), mRNA	sigma factor 4(SIG4)	coding protein	psRNATarget